XLOC_028609



Basic Information


Item Value
gene id XLOC_028609
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12988978 ~ 12989698 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00058126
AGCCTCAGGTGTTTCTAATCAGGTTGCAGGTGAACTGAAGTGGCTTTTTGGGATCAGGATTGTCCTAAAGGAAAGCTCTTTGTGTTCCAGTCTTCATGTGTTGATACAGATCCACTGATTGTCCACAAGAGGGAACTGAAACGCTTATCTGATCTACAAGTATTtaattttagttcagttcagtcttTTAAAACTGAGACCCTCCCTTGGCAAGTTATTAAACTGGATGAAGTGCCATTGAAGAAACCCCACAGAAAACaatgatgttaaaataaaattgatatacagtcattttttttacattttcaataatAACATTGTTTTGTGTTGCACCACTCCAAACAAGCTTTAAAATACTTGTCAAATCTAAAATGAAATCAGTGTTTCATTTCCCTCTTGTGGACAATCAGTGGATCTGCATCAACACATGAAGACTGAAACACAAAGAGCTTTCCTTTAGGACAATCCTGATCCCGAAGAGCCACTTTCCAGTTCACCTGCAACCTGATTAGAAAC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00058126 True 516 lncRNA 0.38 2 12988978 12989698

Neighbor


gene id symbol gene type direction distance location
XLOC_028608 tmbim4 coding downstream 10053 12971255 ~ 12978925 (-)
XLOC_028607 lemd3 coding downstream 58892 12917164 ~ 12930086 (-)
XLOC_028606 msrb3 coding downstream 74671 12890668 ~ 12914307 (-)
XLOC_028605 BX119963.4 coding downstream 105651 12873982 ~ 12883327 (-)
XLOC_028604 hmga2 coding downstream 126891 12819272 ~ 12862087 (-)
XLOC_028610 si:dkey-6a5.3 coding upstream 4215 12993913 ~ 12997587 (-)
XLOC_028611 NA coding upstream 33809 13023507 ~ 13024168 (-)
XLOC_028612 grip1 coding upstream 46172 13035870 ~ 13255813 (-)
XLOC_028613 NA coding upstream 355974 13345672 ~ 13393170 (-)
XLOC_028614 NA coding upstream 487531 13477229 ~ 13478821 (-)
XLOC_028600 NA non-coding downstream 244625 12741362 ~ 12744353 (-)
XLOC_028597 AL844512.1 non-coding downstream 393174 12595680 ~ 12595804 (-)
XLOC_028593 NA non-coding downstream 691528 12288765 ~ 12297450 (-)
XLOC_028591 NA non-coding downstream 747405 12240134 ~ 12241573 (-)
XLOC_028615 NA non-coding upstream 500065 13489763 ~ 13490081 (-)
XLOC_028624 NA non-coding upstream 636284 13625982 ~ 13626833 (-)

Expression



Co-expression Network