G947338


Basic Information

Item Value
gene id G947338
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14900653 ~ 14900869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080205
CAGAGCTATGGGAGCTGTATCTACTACGCTTTGTTTCAGGACAAACTGGATCGCTCAGAGTTCCAATGCGGCAATTGATTGCTTGTCGAGGATTATAGGCTTTAGGTGGCTTCCTTGATCACGCAGGTTGCCAGCCTACATAAGAAACTTGGGAAAACGCATAGTGGAATATTTACCTTTTCTACGCCGGTGGCTGGACGGCGTTTGCACATTTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080205 True 217 lncRNA 0.47 1 14900653 14900869

Neighbor

gene id symbol gene type direction distance location
LOC110535327 LOC106579529 coding upstream 18461 14840653 ~ 14882192 (+)
trnay-gua-3 NA coding upstream 69792 14830776 ~ 14830861 (+)
crf crf coding upstream 105959 14793195 ~ 14794694 (+)
LOC110535322 LOC106579526 coding upstream 185230 14665667 ~ 14715423 (+)
LOC110535321 LOC106579524 coding upstream 237093 14660285 ~ 14663560 (+)
LOC110535331 LOC106579535 coding downstream 4559 14905428 ~ 14918163 (+)
LOC118937318 NA coding downstream 97010 14997879 ~ 15016727 (+)
abhd10b abhd10 coding downstream 368743 15269612 ~ 15277101 (+)
tagln3b tagln3 coding downstream 377605 15278474 ~ 15282213 (+)
LOC110536556 LOC106590436 coding downstream 382426 15283295 ~ 15284424 (+)
G947302 NA non-coding upstream 10188 14889628 ~ 14890465 (+)
G947286 NA non-coding upstream 88110 14812331 ~ 14812543 (+)
G947283 NA non-coding upstream 91992 14808462 ~ 14808661 (+)
G947278 NA non-coding upstream 103922 14796443 ~ 14796731 (+)
G947254 NA non-coding upstream 123617 14774003 ~ 14777036 (+)
G947277 NA non-coding downstream 18285 14919154 ~ 14919395 (+)
G947426 NA non-coding downstream 26634 14927503 ~ 14927739 (+)
G947438 NA non-coding downstream 34788 14935657 ~ 14935868 (+)
G947440 NA non-coding downstream 35809 14936678 ~ 14936904 (+)
G947443 NA non-coding downstream 39549 14940418 ~ 14940622 (+)
G947301 LOC106590396 other upstream 13371 14886614 ~ 14887282 (+)
G946999 NA other upstream 316604 14582543 ~ 14584049 (+)
G946692 NA other upstream 499009 14401254 ~ 14401644 (+)
G946690 NA other upstream 500380 14399862 ~ 14400273 (+)
spata13 LOC106579541 other downstream 384310 15285042 ~ 15320246 (+)
LOC110535338 LOC106579503 other downstream 536812 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 686961 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 751105 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 846504 15747150 ~ 15800515 (+)

Expression


Co-expression Network