G947440


Basic Information

Item Value
gene id G947440
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14936678 ~ 14936904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080314
ttaacttggctttcgaagactttagaaaggcagggtaggatagatataggtctgtaacagtttgcgtctagaatgtctccccctttgaagagggggatgaccgtggcagctttccaatctttagggatctcagacgatacgaaagagaggttgaacagtctagtaataggggttgcaacaattgcgatggataattttagaaagagagggtccagattgtctagccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080314 True 227 lncRNA 0.44 1 14936678 14936904

Neighbor

gene id symbol gene type direction distance location
LOC110535331 LOC106579535 coding upstream 18515 14905428 ~ 14918163 (+)
LOC110535327 LOC106579529 coding upstream 54486 14840653 ~ 14882192 (+)
trnay-gua-3 NA coding upstream 105817 14830776 ~ 14830861 (+)
crf crf coding upstream 141984 14793195 ~ 14794694 (+)
LOC110535322 LOC106579526 coding upstream 221255 14665667 ~ 14715423 (+)
LOC118937318 NA coding downstream 60975 14997879 ~ 15016727 (+)
abhd10b abhd10 coding downstream 332708 15269612 ~ 15277101 (+)
tagln3b tagln3 coding downstream 341570 15278474 ~ 15282213 (+)
LOC110536556 LOC106590436 coding downstream 346391 15283295 ~ 15284424 (+)
spata13 LOC106579541 coding downstream 348138 15285042 ~ 15320246 (+)
G947438 NA non-coding upstream 810 14935657 ~ 14935868 (+)
G947426 NA non-coding upstream 8939 14927503 ~ 14927739 (+)
G947277 NA non-coding upstream 17283 14919154 ~ 14919395 (+)
G947338 NA non-coding upstream 35809 14900653 ~ 14900869 (+)
G947302 NA non-coding upstream 46213 14889628 ~ 14890465 (+)
G947443 NA non-coding downstream 3514 14940418 ~ 14940622 (+)
G947449 NA non-coding downstream 7130 14944034 ~ 14944251 (+)
G947460 NA non-coding downstream 20239 14957143 ~ 14957372 (+)
G947474 NA non-coding downstream 28371 14965275 ~ 14965488 (+)
G947475 NA non-coding downstream 28728 14965632 ~ 14966015 (+)
G947301 LOC106590396 other upstream 49396 14886614 ~ 14887282 (+)
G946999 NA other upstream 352629 14582543 ~ 14584049 (+)
G946692 NA other upstream 535034 14401254 ~ 14401644 (+)
G946690 NA other upstream 536405 14399862 ~ 14400273 (+)
LOC110535338 LOC106579503 other downstream 500777 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 650926 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 715070 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 810469 15747150 ~ 15800515 (+)

Expression


Co-expression Network