G947443


Basic Information

Item Value
gene id G947443
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14940418 ~ 14940622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080317
cctatcaggtggatggattatcttggcaaaggagaaatgttcaataagagcgatgtaaacaaatttgtgcgtATGTAaaaattctgggatcttttatttcagctcatgaaacatgggaccaacacttcatatgttgcgtttatatttttgttcagtgtagtaatcCAAACAATGAGGTGGATTCATATTCTGAAATTGAACATCC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080317 True 205 lncRNA 0.35 1 14940418 14940622

Neighbor

gene id symbol gene type direction distance location
LOC110535331 LOC106579535 coding upstream 22255 14905428 ~ 14918163 (+)
LOC110535327 LOC106579529 coding upstream 58226 14840653 ~ 14882192 (+)
trnay-gua-3 NA coding upstream 109557 14830776 ~ 14830861 (+)
crf crf coding upstream 145724 14793195 ~ 14794694 (+)
LOC110535322 LOC106579526 coding upstream 224995 14665667 ~ 14715423 (+)
LOC118937318 NA coding downstream 57257 14997879 ~ 15016727 (+)
abhd10b abhd10 coding downstream 328990 15269612 ~ 15277101 (+)
tagln3b tagln3 coding downstream 337852 15278474 ~ 15282213 (+)
LOC110536556 LOC106590436 coding downstream 342673 15283295 ~ 15284424 (+)
spata13 LOC106579541 coding downstream 344420 15285042 ~ 15320246 (+)
G947440 NA non-coding upstream 3514 14936678 ~ 14936904 (+)
G947438 NA non-coding upstream 4550 14935657 ~ 14935868 (+)
G947426 NA non-coding upstream 12679 14927503 ~ 14927739 (+)
G947277 NA non-coding upstream 21023 14919154 ~ 14919395 (+)
G947338 NA non-coding upstream 39549 14900653 ~ 14900869 (+)
G947449 NA non-coding downstream 3412 14944034 ~ 14944251 (+)
G947460 NA non-coding downstream 16521 14957143 ~ 14957372 (+)
G947474 NA non-coding downstream 24653 14965275 ~ 14965488 (+)
G947475 NA non-coding downstream 25010 14965632 ~ 14966015 (+)
G947499 NA non-coding downstream 41516 14982138 ~ 14982377 (+)
G947301 LOC106590396 other upstream 53136 14886614 ~ 14887282 (+)
G946999 NA other upstream 356369 14582543 ~ 14584049 (+)
G946692 NA other upstream 538774 14401254 ~ 14401644 (+)
G946690 NA other upstream 540145 14399862 ~ 14400273 (+)
LOC110535338 LOC106579503 other downstream 497059 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 647208 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 711352 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 806751 15747150 ~ 15800515 (+)

Expression


Co-expression Network