XLOC_028611


Basic Information

Item Value
gene id XLOC_028611
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13023507 ~ 13024168 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057333
TAATAAGAGAAACAAATGAACAATATATTAACAAACTCAAAAACTAAGATAAGTAACATAAGCACGTTGTCTTCTGCGCTACTGCGCCTTTAAGAGCGCGACCACGTGTTGCGGAAACTaccgacaacaacaacaacaacaggacgCGGGGCTCAACAATGGAGAGAAACACTCTCCTGCTTTATATCAGACCATGAAGGCTTCAATGGAACCTTAAAAAACTCACCTCAAGACTTTGCTGTTATAGAGATAGACGCCAATGGACAACTTGTTAACAGTGTAAATACTGATGAAGAAGAAAGACCTCCTCAAGCTACAAAAaggattaataaattaatatcatCTAAACCAGATGACACTGACAGTTTAATTCAGGATTGTTTTGATCTGAATCTAATCCTGGTTTCAAGTGTGAGCGTGGAATTTGAAGCATTTTACTAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057333 True 441 lncRNA 0.38 2 13023507 13024168

Neighbor

gene id symbol gene type direction distance location
XLOC_028610 si:dkey-6a5.3 coding downstream 25920 12993913 ~ 12997587 (-)
XLOC_028609 NA coding downstream 33809 12988978 ~ 12989698 (-)
XLOC_028608 tmbim4 coding downstream 44582 12971255 ~ 12978925 (-)
XLOC_028607 lemd3 coding downstream 93421 12917164 ~ 12930086 (-)
XLOC_028606 msrb3 coding downstream 109200 12890668 ~ 12914307 (-)
XLOC_028612 grip1 coding upstream 11702 13035870 ~ 13255813 (-)
XLOC_028613 NA coding upstream 321504 13345672 ~ 13393170 (-)
XLOC_028614 NA coding upstream 453061 13477229 ~ 13478821 (-)
XLOC_028615 NA coding upstream 465595 13489763 ~ 13490081 (-)
XLOC_028616 si:ch211-266a5.12 coding upstream 475096 13499264 ~ 13502549 (-)
XLOC_028605 BX119963.4 non-coding downstream 140180 12873982 ~ 12883327 (-)
XLOC_028600 NA non-coding downstream 279154 12741362 ~ 12744353 (-)
XLOC_028597 AL844512.1 non-coding downstream 427703 12595680 ~ 12595804 (-)
XLOC_028593 NA non-coding downstream 726057 12288765 ~ 12297450 (-)
XLOC_028624 NA non-coding upstream 601814 13625982 ~ 13626833 (-)
XLOC_028626 NA non-coding upstream 856368 13880536 ~ 13889482 (-)

Expression


Co-expression Network