G947474


Basic Information

Item Value
gene id G947474
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14965275 ~ 14965488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080348
ttgttaatctacccatcgtgtccaatttaaaaaatgctttacagctaaagcacaacatatgattattttagatcaccgccaagtcaaaaaaacacacagccattttccagcaaaagataggagtcacaaaaagcagaaatatagataaaattaatcactaacctttgatgatcttcatcagatgacactcataggacatcatgttacacaatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080348 True 214 lncRNA 0.33 1 14965275 14965488

Neighbor

gene id symbol gene type direction distance location
LOC110535331 LOC106579535 coding upstream 47112 14905428 ~ 14918163 (+)
LOC110535327 LOC106579529 coding upstream 83083 14840653 ~ 14882192 (+)
trnay-gua-3 NA coding upstream 134414 14830776 ~ 14830861 (+)
crf crf coding upstream 170581 14793195 ~ 14794694 (+)
LOC110535322 LOC106579526 coding upstream 249852 14665667 ~ 14715423 (+)
LOC118937318 NA coding downstream 32391 14997879 ~ 15016727 (+)
abhd10b abhd10 coding downstream 304124 15269612 ~ 15277101 (+)
tagln3b tagln3 coding downstream 312986 15278474 ~ 15282213 (+)
LOC110536556 LOC106590436 coding downstream 317807 15283295 ~ 15284424 (+)
spata13 LOC106579541 coding downstream 319554 15285042 ~ 15320246 (+)
G947460 NA non-coding upstream 7903 14957143 ~ 14957372 (+)
G947449 NA non-coding upstream 21024 14944034 ~ 14944251 (+)
G947443 NA non-coding upstream 24653 14940418 ~ 14940622 (+)
G947440 NA non-coding upstream 28371 14936678 ~ 14936904 (+)
G947438 NA non-coding upstream 29407 14935657 ~ 14935868 (+)
G947475 NA non-coding downstream 144 14965632 ~ 14966015 (+)
G947499 NA non-coding downstream 16650 14982138 ~ 14982377 (+)
G947516 NA non-coding downstream 25458 14990946 ~ 14991197 (+)
G947594 NA non-coding downstream 117363 15082851 ~ 15083053 (+)
G947599 NA non-coding downstream 123604 15089092 ~ 15089404 (+)
G947301 LOC106590396 other upstream 77993 14886614 ~ 14887282 (+)
G946999 NA other upstream 381226 14582543 ~ 14584049 (+)
G946692 NA other upstream 563631 14401254 ~ 14401644 (+)
G946690 NA other upstream 565002 14399862 ~ 14400273 (+)
LOC110535338 LOC106579503 other downstream 472193 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 622342 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 686486 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 781885 15747150 ~ 15800515 (+)

Expression


Co-expression Network