G947499


Basic Information

Item Value
gene id G947499
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14982138 ~ 14982377 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080373
cccccgagccataagacttctgataAAATAGTTAACTAAATAGCAACCAGGACTATCTGTATTGACCCTTTTTGTACCAACTTTCACTCATCACAGattctgctgctactgtttactttctgtcactttattcctagttatatgtacatatctacctcaaagacctcgtacccctgcacatccactctgtactggtaaaacgggtatatagacaagttatcatCACTCATTGTGTATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080373 True 240 lncRNA 0.38 1 14982138 14982377

Neighbor

gene id symbol gene type direction distance location
LOC110535331 LOC106579535 coding upstream 63975 14905428 ~ 14918163 (+)
LOC110535327 LOC106579529 coding upstream 99946 14840653 ~ 14882192 (+)
trnay-gua-3 NA coding upstream 151277 14830776 ~ 14830861 (+)
crf crf coding upstream 187444 14793195 ~ 14794694 (+)
LOC110535322 LOC106579526 coding upstream 266715 14665667 ~ 14715423 (+)
LOC118937318 NA coding downstream 15502 14997879 ~ 15016727 (+)
abhd10b abhd10 coding downstream 287235 15269612 ~ 15277101 (+)
tagln3b tagln3 coding downstream 296097 15278474 ~ 15282213 (+)
LOC110536556 LOC106590436 coding downstream 300918 15283295 ~ 15284424 (+)
spata13 LOC106579541 coding downstream 302665 15285042 ~ 15320246 (+)
G947475 NA non-coding upstream 16123 14965632 ~ 14966015 (+)
G947474 NA non-coding upstream 16650 14965275 ~ 14965488 (+)
G947460 NA non-coding upstream 24766 14957143 ~ 14957372 (+)
G947449 NA non-coding upstream 37887 14944034 ~ 14944251 (+)
G947443 NA non-coding upstream 41516 14940418 ~ 14940622 (+)
G947516 NA non-coding downstream 8569 14990946 ~ 14991197 (+)
G947594 NA non-coding downstream 100474 15082851 ~ 15083053 (+)
G947599 NA non-coding downstream 106715 15089092 ~ 15089404 (+)
G947648 NA non-coding downstream 179357 15161734 ~ 15172265 (+)
G947654 NA non-coding downstream 194086 15176463 ~ 15176755 (+)
G947301 LOC106590396 other upstream 94856 14886614 ~ 14887282 (+)
G946999 NA other upstream 398089 14582543 ~ 14584049 (+)
G946692 NA other upstream 580494 14401254 ~ 14401644 (+)
G946690 NA other upstream 581865 14399862 ~ 14400273 (+)
LOC110535338 LOC106579503 other downstream 455304 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 605453 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 669597 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 764996 15747150 ~ 15800515 (+)

Expression


Co-expression Network