G947648


Basic Information

Item Value
gene id G947648
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15161734 ~ 15172265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080532
cgcacactctctctctctctctctaatccacAGAGAAACCTTTTAGCAGTCCTCTCCTCCATGTTGGACAACAGAGGCCCGAATAGAGCTCTACTAGTATTCCCCTACCTGTGTTGTATTCAGAGGTAGTAGTTAGTTCAATTACCGATAAGGCGTGTGTATATTGTGTGAAATGCATGTGGTTGAGTTACTTAGGAGAAACACTGTAAAAGCTTCAATCCAGAAGGATCTGCTCTGAGAGAGGTTGGACATGGTGACGGCCATCGGTTAGGCCTGTCAGACCAGGGATTCGCCTACAGCTGTCAGTCCCAGGATAAAGGAGAGAAAATGGAATAGATTTCATCCCTGGACCCTGCAGCTCAGCAGTGACTGGTTTTCAGTTACTGACTATcaacgctccctctctctccatcttaccttctctttctctccatcaccgTGCTGCTCTTTCATGACTCATTTTCTCTCATTCCCACCCAGTGTGATTTTCTTTGGTCATACATTTTTTTCGTTCCTATTGACTGAAAATATGTTGTTCCATTAGACACAATTGTTGAATATTTGCTTGGTATTGTATTATGATATACTACATAATGCATTTTATGTATGGATAGGGCTACTGCATTTAAACACAACTcaaacaaattgcaaaaatcacggaagttggagacttatatctccctcgctaactttaagcatcggctgtcagagcagcttaccgatcactgcagctgtacacagcccatctgtaaatagcccatccatccaaccaactacctcatccccatatttatttatttatttatttattctgctcttttgcacaccagtatttctacttgcatttcttcatctgcacatctatcactccagtgttaattgctaaccatgtgtatgtgacaaataaaatttgatttgatttgatttgctaaattgtaattacttcaccactatggcctatttattgccttacctccttacttcatttgcacaaactgtatacagatgttctattgtgttattgactgtacgtttgtttatcccatgtgtaactctgtgttgttggttttgtcgcactgctttgctttatcttggccaggtcacagttgtaaatgagaatttgttctcaactggcctacctggttaaataaaggtgttctcaactat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080532 True 1167 lncRNA 0.40 2 15161734 15172265

Neighbor

gene id symbol gene type direction distance location
LOC118937318 NA coding upstream 145007 14997879 ~ 15016727 (+)
LOC110535331 LOC106579535 coding upstream 243571 14905428 ~ 14918163 (+)
LOC110535327 LOC106579529 coding upstream 279542 14840653 ~ 14882192 (+)
trnay-gua-3 NA coding upstream 330873 14830776 ~ 14830861 (+)
crf crf coding upstream 367040 14793195 ~ 14794694 (+)
abhd10b abhd10 coding downstream 97347 15269612 ~ 15277101 (+)
tagln3b tagln3 coding downstream 106209 15278474 ~ 15282213 (+)
LOC110536556 LOC106590436 coding downstream 111030 15283295 ~ 15284424 (+)
spata13 LOC106579541 coding downstream 112777 15285042 ~ 15320246 (+)
tmprss7 tmprss7 coding downstream 148317 15320582 ~ 15337190 (+)
G947599 NA non-coding upstream 72330 15089092 ~ 15089404 (+)
G947594 NA non-coding upstream 78681 15082851 ~ 15083053 (+)
G947516 NA non-coding upstream 170537 14990946 ~ 14991197 (+)
G947499 NA non-coding upstream 179357 14982138 ~ 14982377 (+)
G947475 NA non-coding upstream 195719 14965632 ~ 14966015 (+)
G947654 NA non-coding downstream 4198 15176463 ~ 15176755 (+)
G947661 NA non-coding downstream 16139 15188404 ~ 15188626 (+)
G947742 NA non-coding downstream 27757 15200022 ~ 15200359 (+)
G947745 NA non-coding downstream 31293 15203558 ~ 15204228 (+)
G947748 NA non-coding downstream 33364 15205629 ~ 15205952 (+)
G947301 LOC106590396 other upstream 274452 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 491978 14665667 ~ 14715423 (+)
G946999 NA other upstream 577685 14582543 ~ 14584049 (+)
G946692 NA other upstream 760090 14401254 ~ 14401644 (+)
G946690 NA other upstream 761461 14399862 ~ 14400273 (+)
LOC110535338 LOC106579503 other downstream 265416 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 415565 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 479709 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 575108 15747150 ~ 15800515 (+)

Expression


Co-expression Network