G947654


Basic Information

Item Value
gene id G947654
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15176463 ~ 15176755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080539
aaagcatgcacataactctgcaatgttgtgttgtattggagagagtctcagtcttaaatcattttccacacacagtctgtgcctgtatttagttttcatgctagtgagggctgagaatccactctcacataggtacgtggttgcaaatggcatcagtgtcttaacagcatgatttgccaaggcaggatactctgagcgcagcccaatccagaaatctggcagtggcttctgattaaattacattttcacagaaccgcttgttgcaatttcaatgagtCTCTCTTGTTCAGATT

Function

NR:

description
zinc finger BED domain-containing protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080539 True 293 lncRNA 0.42 1 15176463 15176755

Neighbor

gene id symbol gene type direction distance location
LOC118937318 NA coding upstream 159736 14997879 ~ 15016727 (+)
LOC110535331 LOC106579535 coding upstream 258300 14905428 ~ 14918163 (+)
LOC110535327 LOC106579529 coding upstream 294271 14840653 ~ 14882192 (+)
trnay-gua-3 NA coding upstream 345602 14830776 ~ 14830861 (+)
crf crf coding upstream 381769 14793195 ~ 14794694 (+)
abhd10b abhd10 coding downstream 92857 15269612 ~ 15277101 (+)
tagln3b tagln3 coding downstream 101719 15278474 ~ 15282213 (+)
LOC110536556 LOC106590436 coding downstream 106540 15283295 ~ 15284424 (+)
spata13 LOC106579541 coding downstream 108287 15285042 ~ 15320246 (+)
tmprss7 tmprss7 coding downstream 143827 15320582 ~ 15337190 (+)
G947648 NA non-coding upstream 4198 15161734 ~ 15172265 (+)
G947599 NA non-coding upstream 87059 15089092 ~ 15089404 (+)
G947594 NA non-coding upstream 93410 15082851 ~ 15083053 (+)
G947516 NA non-coding upstream 185266 14990946 ~ 14991197 (+)
G947499 NA non-coding upstream 194086 14982138 ~ 14982377 (+)
G947661 NA non-coding downstream 11649 15188404 ~ 15188626 (+)
G947742 NA non-coding downstream 23267 15200022 ~ 15200359 (+)
G947745 NA non-coding downstream 26803 15203558 ~ 15204228 (+)
G947748 NA non-coding downstream 28874 15205629 ~ 15205952 (+)
G947760 NA non-coding downstream 55255 15232010 ~ 15232325 (+)
G947301 LOC106590396 other upstream 289181 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 506707 14665667 ~ 14715423 (+)
G946999 NA other upstream 592414 14582543 ~ 14584049 (+)
G946692 NA other upstream 774819 14401254 ~ 14401644 (+)
G946690 NA other upstream 776190 14399862 ~ 14400273 (+)
LOC110535338 LOC106579503 other downstream 260926 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 411075 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 475219 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 570618 15747150 ~ 15800515 (+)

Expression


Co-expression Network