XLOC_028613


Basic Information

Item Value
gene id XLOC_028613
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13345672 ~ 13393170 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057335
CTGGTTTGCAGCCTATATAACTGCAATGTGCCTATATCAGGTATAGCCTATGTGAAGACTTGACAAAATAATGAGGATTTTCGTGGCTTCGGAAAGGTAGGAAAGGGAAAGTCTTGTTTGTGGTGGGTTGTAGTGGGCACCTTCACATTCGTGTGTCTGCTCACACCCCCAGCTCAGCTCCACAACGAGGCTGAGGGAGACACGGCGTTCAATTACACCGGCTGCCAGTGAATAGAAGGGACGAGGCGCGGGGAAATGCACGCCTGTACCGTCAGTGAAATGCGCCTGAGATTTAGCCCCTGAATGCACACGACGCCACCGAAATGCCGGGTTGGAAGAAAAATATCCCCGCTTGCCTGCAAGCCGACCAAGAAGGAGCTGGGTTGCTGGCACCTACTGAGGGAATACCAATACTCTGAATCAGCGGTGCCTTCCTCCTAAACGAAGATCCAAGTGAGCGAACAACATAAtggtctctccctctctctctcttcttgccatctgtttattttaaaagctTTCCTCCACTCATGCGAAATTGGAGTTTGCCTTATGGGGGAGGGGGAAGGACATCCCTGCTTCTTCAGGC
>TCONS_00057334
CTGGTTTGCAGCCTATATAACTGCAATGTGCCTATATCAGGTATAGCCTATGTGAAGACTTGACAAAATAATGAGGATTTTCGTGGCTTCGGAAAGCTCCACAACGAGGCTGAGGGAGACACGGCGTTCAATTACACCGGCTGCCAGTGAATAGAAGGGACGAGGCGCGGGGAAATGCACGCCTGTACCGTCAGTGAAATGCGCCTGAGATTTAGCCCCTGAATGCACACGACGCCACCGAAATGCCGGGTTGGAAGAAAAATATCCCCGCTTGCCTGCAAGCCGACCAAGAAGGAGCTGGGTTGCTGGCACCTACTGAGGGAATACCAATACTCTGAATCAGCGGTGCCTTCCTCCTAAACGAAGATCCAAGTGAGCGAACAACATAAtggtctctccctctctctctcttcttgccatctgtttattttaaaagctTTCCTCCACTCATGCGAAATTGGAGTTTGCCTTATGGGGGAGGGGGAAGGACATCCCTGCTTCTTCAGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057335 False 589 lncRNA 0.51 2 13345672 13393170
TCONS_00057334 True 508 lncRNA 0.51 3 13345672 13393170

Neighbor

gene id symbol gene type direction distance location
XLOC_028612 grip1 coding downstream 89859 13035870 ~ 13255813 (-)
XLOC_028611 NA coding downstream 321504 13023507 ~ 13024168 (-)
XLOC_028610 si:dkey-6a5.3 coding downstream 348085 12993913 ~ 12997587 (-)
XLOC_028609 NA coding downstream 355974 12988978 ~ 12989698 (-)
XLOC_028608 tmbim4 coding downstream 366747 12971255 ~ 12978925 (-)
XLOC_028614 NA coding upstream 84059 13477229 ~ 13478821 (-)
XLOC_028615 NA coding upstream 96593 13489763 ~ 13490081 (-)
XLOC_028616 si:ch211-266a5.12 coding upstream 106094 13499264 ~ 13502549 (-)
XLOC_028617 ifng1 coding upstream 114414 13507584 ~ 13509946 (-)
XLOC_028618 ifng1r coding upstream 124276 13517446 ~ 13518381 (-)
XLOC_028605 BX119963.4 non-coding downstream 462345 12873982 ~ 12883327 (-)
XLOC_028600 NA non-coding downstream 601319 12741362 ~ 12744353 (-)
XLOC_028597 AL844512.1 non-coding downstream 749868 12595680 ~ 12595804 (-)
XLOC_028624 NA non-coding upstream 232812 13625982 ~ 13626833 (-)
XLOC_028626 NA non-coding upstream 487366 13880536 ~ 13889482 (-)
XLOC_028631 NA non-coding upstream 575991 13969161 ~ 13979713 (-)

Expression


Co-expression Network