G947748


Basic Information

Item Value
gene id G947748
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15205629 ~ 15205952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080642
cttcagctcagcgcttgagcccagacattgatgaTCTAGCATCCAAGAATagatgccaggtatctggcttgggcacatcagattagaccagtgtgcaataattaacgttttctttatgcactttttcttgctacaaggcatgggcttgaatggttgattgatttattatcattttatttgtaaaattattagccagtggaaaaagtttattttggtatttaaatcagaaggctgcaaatagaaaagaggcatacaattttatttatttaataaatgaatgccattgatgtgttttttcatttgaaatttgattttgcatgtctc

Function

NR:

description
general transcription factor II-I repeat domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080642 True 324 lncRNA 0.34 1 15205629 15205952

Neighbor

gene id symbol gene type direction distance location
LOC118937318 NA coding upstream 188902 14997879 ~ 15016727 (+)
LOC110535331 LOC106579535 coding upstream 287466 14905428 ~ 14918163 (+)
LOC110535327 LOC106579529 coding upstream 323437 14840653 ~ 14882192 (+)
trnay-gua-3 NA coding upstream 374768 14830776 ~ 14830861 (+)
crf crf coding upstream 410935 14793195 ~ 14794694 (+)
abhd10b abhd10 coding downstream 63660 15269612 ~ 15277101 (+)
tagln3b tagln3 coding downstream 72522 15278474 ~ 15282213 (+)
LOC110536556 LOC106590436 coding downstream 77343 15283295 ~ 15284424 (+)
spata13 LOC106579541 coding downstream 79090 15285042 ~ 15320246 (+)
tmprss7 tmprss7 coding downstream 114630 15320582 ~ 15337190 (+)
G947745 NA non-coding upstream 1401 15203558 ~ 15204228 (+)
G947742 NA non-coding upstream 5270 15200022 ~ 15200359 (+)
G947661 NA non-coding upstream 17003 15188404 ~ 15188626 (+)
G947654 NA non-coding upstream 28874 15176463 ~ 15176755 (+)
G947648 NA non-coding upstream 33364 15161734 ~ 15172265 (+)
G947760 NA non-coding downstream 26058 15232010 ~ 15232325 (+)
G947761 NA non-coding downstream 26784 15232736 ~ 15232938 (+)
G947762 NA non-coding downstream 28331 15234283 ~ 15234760 (+)
G947765 NA non-coding downstream 35270 15241222 ~ 15241442 (+)
G947772 NA non-coding downstream 40475 15246427 ~ 15246875 (+)
G947301 LOC106590396 other upstream 318347 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 535873 14665667 ~ 14715423 (+)
G946999 NA other upstream 621580 14582543 ~ 14584049 (+)
G946692 NA other upstream 803985 14401254 ~ 14401644 (+)
G946690 NA other upstream 805356 14399862 ~ 14400273 (+)
LOC110535338 LOC106579503 other downstream 231729 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 381878 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 446022 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 541421 15747150 ~ 15800515 (+)

Expression


Co-expression Network