G947762



Basic Information


Item Value
gene id G947762
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15234283 ~ 15234760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1080667
taaaaactgtaatatcttatgtttcaccaagtcgtggctgaacgacgacatgaataacacacagctggagggttttaagctttttcggcaggatagaatagcagcatctggtaagacaagggtgtatattgtggcaaagaagggggtcgagtgatggcagatatgtgagagcagaactaataaacgggctctgcccgatcactaaaatggccacccctgtcagaactacagatcacaaaatggccgaccgccaaaactacaagtcccagaagcaaggggaaccctcagaaggtggagccgacccacagataaagggtcaagaaaaaccaggaagagggagagagagtgctggaaggatctatgaacaatagagaaagagaccATAGAGATTGGCAggatttaccgtgtatgagctggattgttttggacttacctgttggcgtttggacctggacctaccgagaaccAGATTCGTgta

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1080667 True 478 lncRNA 0.47 1 15234283 15234760

Neighbor


gene id symbol gene type direction distance location
LOC118937318 NA coding upstream 217556 14997879 ~ 15016727 (+)
LOC110535331 LOC106579535 coding upstream 316120 14905428 ~ 14918163 (+)
LOC110535327 LOC106579529 coding upstream 352091 14840653 ~ 14882192 (+)
trnay-gua-3 NA coding upstream 403422 14830776 ~ 14830861 (+)
crf crf coding upstream 439589 14793195 ~ 14794694 (+)
abhd10b abhd10 coding downstream 34852 15269612 ~ 15277101 (+)
tagln3b tagln3 coding downstream 43714 15278474 ~ 15282213 (+)
LOC110536556 LOC106590436 coding downstream 48535 15283295 ~ 15284424 (+)
spata13 LOC106579541 coding downstream 50282 15285042 ~ 15320246 (+)
tmprss7 tmprss7 coding downstream 85822 15320582 ~ 15337190 (+)
G947761 NA non-coding upstream 1345 15232736 ~ 15232938 (+)
G947760 NA non-coding upstream 1958 15232010 ~ 15232325 (+)
G947748 NA non-coding upstream 28331 15205629 ~ 15205952 (+)
G947745 NA non-coding upstream 30055 15203558 ~ 15204228 (+)
G947742 NA non-coding upstream 33924 15200022 ~ 15200359 (+)
G947765 NA non-coding downstream 6462 15241222 ~ 15241442 (+)
G947772 NA non-coding downstream 11667 15246427 ~ 15246875 (+)
G947810 NA non-coding downstream 102744 15337504 ~ 15337795 (+)
G947811 NA non-coding downstream 103164 15337924 ~ 15338191 (+)
G947813 NA non-coding downstream 104907 15339667 ~ 15339910 (+)
G947301 LOC106590396 other upstream 347001 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 564527 14665667 ~ 14715423 (+)
G946999 NA other upstream 650234 14582543 ~ 14584049 (+)
G946692 NA other upstream 832639 14401254 ~ 14401644 (+)
G946690 NA other upstream 834010 14399862 ~ 14400273 (+)
LOC110535338 LOC106579503 other downstream 202921 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 353070 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 417214 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 512613 15747150 ~ 15800515 (+)

Expression



Co-expression Network