Fish Transcriptome and Expression Database

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model fish

XLOC_028615

Basic Information

Item	Value
gene id	XLOC_028615
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007115.7
NCBI id	CM002888.2
chromosome length	78093715
location	13489763 ~ 13490081 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057336
ATGGTGGTGATATTCTTACCACAAATGTAAAAattcaaaaagaaaacaacaaataaaaccaaCTTACTGCATTGATGATATGACGTCAGCTATGTTTTGGCGGCATCGGCGGCGGAGATTTTGGCGTCGTGATTTGGCAGCGGATGAAATGTGGAGTTCGCCGACGACAGGCGCCTTTAAGCCACCAGAATCCCAGAAGCAGACCTGA

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00057336	True	208	lncRNA	0.45	2	13489763	13490081

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_028614	NA	coding	downstream	10942	13477229 ~ 13478821 (-)
XLOC_028613	NA	coding	downstream	96593	13345672 ~ 13393170 (-)
XLOC_028612	grip1	coding	downstream	233950	13035870 ~ 13255813 (-)
XLOC_028611	NA	coding	downstream	465595	13023507 ~ 13024168 (-)
XLOC_028610	si:dkey-6a5.3	coding	downstream	492176	12993913 ~ 12997587 (-)
XLOC_028616	si:ch211-266a5.12	coding	upstream	9183	13499264 ~ 13502549 (-)
XLOC_028617	ifng1	coding	upstream	17503	13507584 ~ 13509946 (-)
XLOC_028618	ifng1r	coding	upstream	27365	13517446 ~ 13518381 (-)
XLOC_028619	il26	coding	upstream	44973	13535054 ~ 13538714 (-)
XLOC_028620	il22	coding	upstream	54514	13544595 ~ 13548806 (-)
XLOC_028609	NA	non-coding	downstream	500065	12988978 ~ 12989698 (-)
XLOC_028605	BX119963.4	non-coding	downstream	606436	12873982 ~ 12883327 (-)
XLOC_028624	NA	non-coding	upstream	135901	13625982 ~ 13626833 (-)
XLOC_028626	NA	non-coding	upstream	390455	13880536 ~ 13889482 (-)
XLOC_028631	NA	non-coding	upstream	479080	13969161 ~ 13979713 (-)
XLOC_028632	NA	non-coding	upstream	616594	14106675 ~ 14162327 (-)
XLOC_028633	CR786571.2	non-coding	upstream	676961	14167042 ~ 14170406 (-)

Expression

Co-expression Network