G947810


Basic Information

Item Value
gene id G947810
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15337504 ~ 15337795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080724
ctgggatatgttccgggattcattcgataacattgaggagtttaccacaacagtcacaggcttcatcaataagtgcatagatgatgtcgtccccacagtgactataagaacataTCCAATGACATGGACGCACACAAGATGTTCCGCTACAAACATGCAAAAGGACAGTATGGGaggaaggtggaatcctatgacaCTGGCTACGACACTCGTTGtatatggcagggcttgcagacgataccagattacaaagggaaacccagccatgagTTGCCCAGCAATAAAGAACTCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080724 True 292 lncRNA 0.46 1 15337504 15337795

Neighbor

gene id symbol gene type direction distance location
tmprss7 tmprss7 coding upstream 314 15320582 ~ 15337190 (+)
spata13 LOC106579541 coding upstream 17258 15285042 ~ 15320246 (+)
LOC110536556 LOC106590436 coding upstream 53080 15283295 ~ 15284424 (+)
tagln3b tagln3 coding upstream 55291 15278474 ~ 15282213 (+)
abhd10b abhd10 coding upstream 60403 15269612 ~ 15277101 (+)
LOC110536557 LOC106579543 coding downstream 4566 15342361 ~ 15367543 (+)
LOC110535338 LOC106579503 coding downstream 37865 15375660 ~ 15478222 (+)
urad urad coding downstream 140790 15478585 ~ 15479868 (+)
lnx2a lnx2 coding downstream 159666 15497461 ~ 15518161 (+)
usp12a usp12 coding downstream 192380 15530175 ~ 15534688 (+)
G947772 NA non-coding upstream 90629 15246427 ~ 15246875 (+)
G947765 NA non-coding upstream 96062 15241222 ~ 15241442 (+)
G947762 NA non-coding upstream 102744 15234283 ~ 15234760 (+)
G947761 NA non-coding upstream 104566 15232736 ~ 15232938 (+)
G947760 NA non-coding upstream 105179 15232010 ~ 15232325 (+)
G947811 NA non-coding downstream 129 15337924 ~ 15338191 (+)
G947813 NA non-coding downstream 1872 15339667 ~ 15339910 (+)
G947893 NA non-coding downstream 27492 15365287 ~ 15365605 (+)
G947896 NA non-coding downstream 30484 15368279 ~ 15368648 (+)
G947301 LOC106590396 other upstream 450222 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 667748 14665667 ~ 14715423 (+)
G946999 NA other upstream 753455 14582543 ~ 14584049 (+)
G946692 NA other upstream 935860 14401254 ~ 14401644 (+)
rnf6 LOC106579512 other downstream 250035 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 314179 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 409578 15747150 ~ 15800515 (+)
G948524 NA other downstream 716270 16054065 ~ 16054638 (+)

Expression


Co-expression Network