G947896


Basic Information

Item Value
gene id G947896
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15368279 ~ 15368648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080829
ttggactgcaatctgaggtgcagttaactctaataaatgtatcctctgcagcagaggtaactctgggtcttattttcctgtggcggtcctcaaaagagccagtttcatcatagcgcttgatggtttttgcgactgcacttgaagaaaatgtTGAAGTTCCTGAAAtgtctgtattgactgaccttcacgtcttaaaataatgatggactgtcgtttttctctttgcttacttaAGCTGCTCTTGCCATTaaatggacttggtattttaccagatcttctgcataccacccctaccttgtcacaacacaactcattggctcaaacgcattaagaacaaaataaattccacaaatgaacttttaacaaggaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080829 True 370 lncRNA 0.40 1 15368279 15368648

Neighbor

gene id symbol gene type direction distance location
LOC110536557 LOC106579543 coding upstream 736 15342361 ~ 15367543 (+)
tmprss7 tmprss7 coding upstream 31089 15320582 ~ 15337190 (+)
spata13 LOC106579541 coding upstream 48033 15285042 ~ 15320246 (+)
LOC110536556 LOC106590436 coding upstream 83855 15283295 ~ 15284424 (+)
tagln3b tagln3 coding upstream 86066 15278474 ~ 15282213 (+)
LOC110535338 LOC106579503 coding downstream 7012 15375660 ~ 15478222 (+)
urad urad coding downstream 109937 15478585 ~ 15479868 (+)
lnx2a lnx2 coding downstream 128813 15497461 ~ 15518161 (+)
usp12a usp12 coding downstream 161527 15530175 ~ 15534688 (+)
LOC110535348 LOC106579510 coding downstream 171030 15539678 ~ 15547074 (+)
G947893 NA non-coding upstream 2674 15365287 ~ 15365605 (+)
G947813 NA non-coding upstream 28369 15339667 ~ 15339910 (+)
G947811 NA non-coding upstream 30088 15337924 ~ 15338191 (+)
G947810 NA non-coding upstream 30484 15337504 ~ 15337795 (+)
G947898 NA non-coding downstream 272 15368920 ~ 15369398 (+)
G947951 NA non-coding downstream 59282 15427930 ~ 15428384 (+)
G947952 NA non-coding downstream 61939 15430587 ~ 15430880 (+)
G947956 NA non-coding downstream 67678 15436326 ~ 15437618 (+)
G947984 NA non-coding downstream 121640 15490288 ~ 15490511 (+)
G947301 LOC106590396 other upstream 480997 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 698523 14665667 ~ 14715423 (+)
G946999 NA other upstream 784230 14582543 ~ 14584049 (+)
G946692 NA other upstream 966635 14401254 ~ 14401644 (+)
rnf6 LOC106579512 other downstream 219182 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 283326 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 378725 15747150 ~ 15800515 (+)
G948524 NA other downstream 685417 16054065 ~ 16054638 (+)

Expression


Co-expression Network