Gene
RNA
| Item | Value |
|---|---|
| gene id | G947898 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 15368920 ~ 15369398 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1080831 | True | 479 | lncRNA | 0.35 | 1 | 15368920 | 15369398 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110536557 | LOC106579543 | coding | upstream | 1377 | 15342361 ~ 15367543 (+) |
| tmprss7 | tmprss7 | coding | upstream | 31730 | 15320582 ~ 15337190 (+) |
| spata13 | LOC106579541 | coding | upstream | 48674 | 15285042 ~ 15320246 (+) |
| LOC110536556 | LOC106590436 | coding | upstream | 84496 | 15283295 ~ 15284424 (+) |
| tagln3b | tagln3 | coding | upstream | 86707 | 15278474 ~ 15282213 (+) |
| LOC110535338 | LOC106579503 | coding | downstream | 6262 | 15375660 ~ 15478222 (+) |
| urad | urad | coding | downstream | 109187 | 15478585 ~ 15479868 (+) |
| lnx2a | lnx2 | coding | downstream | 128063 | 15497461 ~ 15518161 (+) |
| usp12a | usp12 | coding | downstream | 160777 | 15530175 ~ 15534688 (+) |
| LOC110535348 | LOC106579510 | coding | downstream | 170280 | 15539678 ~ 15547074 (+) |
| G947896 | NA | non-coding | upstream | 272 | 15368279 ~ 15368648 (+) |
| G947893 | NA | non-coding | upstream | 3315 | 15365287 ~ 15365605 (+) |
| G947813 | NA | non-coding | upstream | 29010 | 15339667 ~ 15339910 (+) |
| G947811 | NA | non-coding | upstream | 30729 | 15337924 ~ 15338191 (+) |
| G947951 | NA | non-coding | downstream | 58532 | 15427930 ~ 15428384 (+) |
| G947952 | NA | non-coding | downstream | 61189 | 15430587 ~ 15430880 (+) |
| G947956 | NA | non-coding | downstream | 66928 | 15436326 ~ 15437618 (+) |
| G947984 | NA | non-coding | downstream | 120890 | 15490288 ~ 15490511 (+) |
| G947980 | NA | non-coding | downstream | 121709 | 15491107 ~ 15491630 (+) |
| G947301 | LOC106590396 | other | upstream | 481638 | 14886614 ~ 14887282 (+) |
| LOC110535322 | LOC106579526 | other | upstream | 699164 | 14665667 ~ 14715423 (+) |
| G946999 | NA | other | upstream | 784871 | 14582543 ~ 14584049 (+) |
| G946692 | NA | other | upstream | 967276 | 14401254 ~ 14401644 (+) |
| rnf6 | LOC106579512 | other | downstream | 218432 | 15587284 ~ 15593900 (+) |
| atp8a2 | LOC106579514 | other | downstream | 282576 | 15594416 ~ 15660363 (+) |
| boc | LOC106579445 | other | downstream | 377975 | 15747150 ~ 15800515 (+) |
| G948524 | NA | other | downstream | 684667 | 16054065 ~ 16054638 (+) |
