G947952


Basic Information

Item Value
gene id G947952
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15430587 ~ 15430880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080892
cccgagccactgcctgttcaccccgctatcatccattaggcaaggtcagtacaggtgcatcaaagctggaaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaatagccaccactaggCAGCTTCTACCAAGTTATGTAGCCCTGCACCTTAGATGCTGCTGcactatatacatagacatgaaatcactggccacttaataatggaacactagtcatttcAATAATGTTTACGTATTTTTGCTTTgctcatttcatatgtatgtactgtattctattc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080892 True 294 lncRNA 0.43 1 15430587 15430880

Neighbor

gene id symbol gene type direction distance location
LOC110536557 LOC106579543 coding upstream 63044 15342361 ~ 15367543 (+)
tmprss7 tmprss7 coding upstream 93397 15320582 ~ 15337190 (+)
spata13 LOC106579541 coding upstream 110341 15285042 ~ 15320246 (+)
LOC110536556 LOC106590436 coding upstream 146163 15283295 ~ 15284424 (+)
tagln3b tagln3 coding upstream 148374 15278474 ~ 15282213 (+)
urad urad coding downstream 47705 15478585 ~ 15479868 (+)
lnx2a lnx2 coding downstream 66581 15497461 ~ 15518161 (+)
usp12a usp12 coding downstream 99295 15530175 ~ 15534688 (+)
LOC110535348 LOC106579510 coding downstream 108798 15539678 ~ 15547074 (+)
rnf6 LOC106579512 coding downstream 156404 15587284 ~ 15593900 (+)
G947951 NA non-coding upstream 2203 15427930 ~ 15428384 (+)
G947898 NA non-coding upstream 61189 15368920 ~ 15369398 (+)
G947896 NA non-coding upstream 61939 15368279 ~ 15368648 (+)
G947893 NA non-coding upstream 64982 15365287 ~ 15365605 (+)
G947956 NA non-coding downstream 5446 15436326 ~ 15437618 (+)
G947984 NA non-coding downstream 59408 15490288 ~ 15490511 (+)
G947980 NA non-coding downstream 60227 15491107 ~ 15491630 (+)
G947999 NA non-coding downstream 87612 15518492 ~ 15518714 (+)
G948000 NA non-coding downstream 89584 15520464 ~ 15520678 (+)
G947301 LOC106590396 other upstream 543305 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 760831 14665667 ~ 14715423 (+)
G946999 NA other upstream 846538 14582543 ~ 14584049 (+)
G946692 NA other upstream 1028943 14401254 ~ 14401644 (+)
LOC110535338 LOC106579503 other downstream 6801 15375660 ~ 15478222 (+)
atp8a2 LOC106579514 other downstream 221094 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 316493 15747150 ~ 15800515 (+)
G948524 NA other downstream 623185 16054065 ~ 16054638 (+)

Expression


Co-expression Network