G947956


Basic Information

Item Value
gene id G947956
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15436326 ~ 15437618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080900
ATTAAAATACTGCTGTACACACAAATATTACAACATTTTAGTCAAACACAAGAGGGGCATAAAACATACTAAGATGgtgatggaggtgtgtgtgtggggggagaggtgtgtgtggggggaggtgtgtgtgtgtgtgtgtgtggggagagaggCAGTAAGTTAGTGATGCACGGGTTGACTCATACCCCGCACGGTTATATCCGCAGGGCAAGGGTTTTAGGGTCCTGAAATATTGTGTGCTtgaagggtgggtgggtggatgaagGGTGGGTGGGTGGCAGGTGGAATAAAgtgaagggggaaaaaaagaatttaaaaaaatctgtaCATGTTTAATTGTGTAACTCCAGGCTACATTGAGTTTTTTATTTAATTAGAAAAATGAGTGTGTAAACCTAAGCTTCAGGGCCTAACTGCAGGCTCCACGTGCCAACTAACCTAGCACAGAGGGCGCTATTTTATTTCCCAACAGTGCTGCAAAAGAACGACGAAAGTAGGCCGTTACAGTTCCAACTGGACAGTGGCTACTTTGGTTTTCTAAACGTTATTTTGTGTAATAGTGTATTTATTTTCTAAgccatagaaaatagtaaaaagaaatacatacacccacacacttcATCAGATGTTTAATTTAATTCATATGCTGGTAGAGGCTATTAGCCCACAGGCAGTCGGCCTAAAATATATCCATTTATTGTTTCACATTTGTTTCAGCAAAACATTAGGCCAAAATAGTCAATAAATTGATGAAATGTTGAAGAAAAACATCATTGTTCAATAAATGTTCAAGAGAAAAGCGAACAGAGCCTTTTCTATATTAGCGGGTTAGGGTTGGATGCAGCCCTCAGATTTCCACTATCACATATAGTCGGGTTGTTGGgggtgcgggtgaacaaacagctgacccgcgcATCACTAGCGCTAGTATTACTGGAGTGTGTGTCATGATGGTGATATGATAAACGTTGACATGTGAGGATAGTGATGGCTGTGTGTTGGTATGGGTGTGTGGAAGAGATTGGTTTAAAGATAGGGGTCTAAGCACCACATTCACCAAATATGCTTTCGGTCTTGATCATGTCACTAAAAACAGGAAACAGTACATGATTCTAACATAGCCAACTCACAGCTCACCTCATGGATGCCCCTAACAACTGACATAGGGTCAGATATGTTGTCATCCCCCTAGTAGTTCAGGTAAGACTGGACTACGGTAAACTGATGCTAGATCTGTGCTTAGGAGCATCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080900 True 1251 lncRNA 0.42 2 15436326 15437618

Neighbor

gene id symbol gene type direction distance location
LOC110536557 LOC106579543 coding upstream 68783 15342361 ~ 15367543 (+)
tmprss7 tmprss7 coding upstream 99136 15320582 ~ 15337190 (+)
spata13 LOC106579541 coding upstream 116080 15285042 ~ 15320246 (+)
LOC110536556 LOC106590436 coding upstream 151902 15283295 ~ 15284424 (+)
tagln3b tagln3 coding upstream 154113 15278474 ~ 15282213 (+)
urad urad coding downstream 40967 15478585 ~ 15479868 (+)
lnx2a lnx2 coding downstream 59843 15497461 ~ 15518161 (+)
usp12a usp12 coding downstream 92557 15530175 ~ 15534688 (+)
LOC110535348 LOC106579510 coding downstream 102060 15539678 ~ 15547074 (+)
rnf6 LOC106579512 coding downstream 149666 15587284 ~ 15593900 (+)
G947952 NA non-coding upstream 5446 15430587 ~ 15430880 (+)
G947951 NA non-coding upstream 7942 15427930 ~ 15428384 (+)
G947898 NA non-coding upstream 66928 15368920 ~ 15369398 (+)
G947896 NA non-coding upstream 67678 15368279 ~ 15368648 (+)
G947893 NA non-coding upstream 70721 15365287 ~ 15365605 (+)
G947984 NA non-coding downstream 52670 15490288 ~ 15490511 (+)
G947980 NA non-coding downstream 53489 15491107 ~ 15491630 (+)
G947999 NA non-coding downstream 80874 15518492 ~ 15518714 (+)
G948000 NA non-coding downstream 82846 15520464 ~ 15520678 (+)
G948005 rpl21 non-coding downstream 88819 15526437 ~ 15529942 (+)
G947301 LOC106590396 other upstream 549044 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 766570 14665667 ~ 14715423 (+)
G946999 NA other upstream 852277 14582543 ~ 14584049 (+)
G946692 NA other upstream 1034682 14401254 ~ 14401644 (+)
LOC110535338 LOC106579503 other downstream 63 15375660 ~ 15478222 (+)
atp8a2 LOC106579514 other downstream 214356 15594416 ~ 15660363 (+)
boc LOC106579445 other downstream 309755 15747150 ~ 15800515 (+)
G948524 NA other downstream 616447 16054065 ~ 16054638 (+)

Expression


Co-expression Network