G947980


Basic Information

Item Value
gene id G947980
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15491107 ~ 15491630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080931
agtagaaagacatttgaaaaaaagagtagcaaggctatatatagacacctgttagtcaggcttactggggtagtatgtacatgtaggtatcattaaagtgactgtgcatatatgatgaacagagagttgcagaagcgtaaaaagaggggttggcgggtggtgggacacaatgcagatagcccggttagccaatgtgcggaagcactggttggtcgggccaatttaggtagtatgtacatgcatgtatagttaaagtgactatgcatatgagataaacagagagtagcagcagcgtaaaagaggggttgggaggaGGAGGCACATGATGCAAATAGTCCGGAGTCTTATGGcctacatttcggtgttcctcaaggttctgttttaggaccactattgttttcactatatattttacctcttgctggaggctgagacagctcCCCCCGTGCATTTTGTtcttttttactgctgctcttaaatTACTTGTTAATTTGATTTACTCTTATCcacattttttgaaactg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080931 True 524 lncRNA 0.42 1 15491107 15491630

Neighbor

gene id symbol gene type direction distance location
urad urad coding upstream 11239 15478585 ~ 15479868 (+)
LOC110535338 LOC106579503 coding upstream 12885 15375660 ~ 15478222 (+)
LOC110536557 LOC106579543 coding upstream 123564 15342361 ~ 15367543 (+)
tmprss7 tmprss7 coding upstream 153917 15320582 ~ 15337190 (+)
spata13 LOC106579541 coding upstream 170861 15285042 ~ 15320246 (+)
lnx2a lnx2 coding downstream 5831 15497461 ~ 15518161 (+)
usp12a usp12 coding downstream 38545 15530175 ~ 15534688 (+)
LOC110535348 LOC106579510 coding downstream 48048 15539678 ~ 15547074 (+)
rnf6 LOC106579512 coding downstream 95654 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 coding downstream 102786 15594416 ~ 15660363 (+)
G947984 NA non-coding upstream 596 15490288 ~ 15490511 (+)
G947956 NA non-coding upstream 53489 15436326 ~ 15437618 (+)
G947952 NA non-coding upstream 60227 15430587 ~ 15430880 (+)
G947951 NA non-coding upstream 62723 15427930 ~ 15428384 (+)
G947898 NA non-coding upstream 121709 15368920 ~ 15369398 (+)
G947999 NA non-coding downstream 26862 15518492 ~ 15518714 (+)
G948000 NA non-coding downstream 28834 15520464 ~ 15520678 (+)
G948005 rpl21 non-coding downstream 34807 15526437 ~ 15529942 (+)
G948011 NA non-coding downstream 46535 15538165 ~ 15538443 (+)
G947301 LOC106590396 other upstream 603825 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 821351 14665667 ~ 14715423 (+)
G946999 NA other upstream 907058 14582543 ~ 14584049 (+)
boc LOC106579445 other downstream 255743 15747150 ~ 15800515 (+)
G948524 NA other downstream 562435 16054065 ~ 16054638 (+)
sh3kbp1 LOC106579452 other downstream 581786 16073315 ~ 16098499 (+)

Expression


Co-expression Network