G948000


Basic Information

Item Value
gene id G948000
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15520464 ~ 15520678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080971
ctccgatacacaacccaaccaagccgcactgcttcttaacacagcgccatccaacccggaagccagccacaccaatgtgtcagaggaaacaccgtgcacctggcaaccttagttagcacgcactgcgcccagcccgccacaggagtcgctggtgcgcgatgagacaaggatatccctaccggccaaaccctccctaacccagacaacgctaggcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080971 True 215 lncRNA 0.60 1 15520464 15520678

Neighbor

gene id symbol gene type direction distance location
lnx2a lnx2 coding upstream 2303 15497461 ~ 15518161 (+)
urad urad coding upstream 40596 15478585 ~ 15479868 (+)
LOC110535338 LOC106579503 coding upstream 42242 15375660 ~ 15478222 (+)
LOC110536557 LOC106579543 coding upstream 152921 15342361 ~ 15367543 (+)
tmprss7 tmprss7 coding upstream 183274 15320582 ~ 15337190 (+)
usp12a usp12 coding downstream 9497 15530175 ~ 15534688 (+)
LOC110535348 LOC106579510 coding downstream 19000 15539678 ~ 15547074 (+)
rnf6 LOC106579512 coding downstream 66606 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 coding downstream 73738 15594416 ~ 15660363 (+)
spice1 spice1 coding downstream 167582 15688260 ~ 15695114 (+)
G947999 NA non-coding upstream 1750 15518492 ~ 15518714 (+)
G947980 NA non-coding upstream 28834 15491107 ~ 15491630 (+)
G947984 NA non-coding upstream 29953 15490288 ~ 15490511 (+)
G947956 NA non-coding upstream 82846 15436326 ~ 15437618 (+)
G947952 NA non-coding upstream 89584 15430587 ~ 15430880 (+)
G948005 rpl21 non-coding downstream 5759 15526437 ~ 15529942 (+)
G948011 NA non-coding downstream 17487 15538165 ~ 15538443 (+)
G948049 LOC106579518 non-coding downstream 174512 15695190 ~ 15699638 (+)
G948092 NA non-coding downstream 208012 15728690 ~ 15728894 (+)
spata13 LOC106579541 other upstream 221091 15285042 ~ 15320246 (+)
G947301 LOC106590396 other upstream 633182 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 850708 14665667 ~ 14715423 (+)
G946999 NA other upstream 936415 14582543 ~ 14584049 (+)
boc LOC106579445 other downstream 226695 15747150 ~ 15800515 (+)
G948524 NA other downstream 533387 16054065 ~ 16054638 (+)
sh3kbp1 LOC106579452 other downstream 552738 16073315 ~ 16098499 (+)

Expression


Co-expression Network