G948011


Basic Information

Item Value
gene id G948011
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15538165 ~ 15538443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080990
GTTATGGATACTCCTTCCTTTAATGAAGGCTGATTGAGTTTCACtgattatatacagttgaagtcaaaagtttacatacacttaggttgaagtcattaaaactcgttattcaaccactccacaaatttgtctcctagagatgaacgcactttggtgtgaaaagtgcaaatcaatcccagaacaacagcaaaagacattgtgaagatgctggaggaaactggtacaaaagtatctatatccacagtaaaacgagtcctatatcgacataacctgaaaggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080990 True 279 lncRNA 0.37 1 15538165 15538443

Neighbor

gene id symbol gene type direction distance location
usp12a usp12 coding upstream 3477 15530175 ~ 15534688 (+)
lnx2a lnx2 coding upstream 20004 15497461 ~ 15518161 (+)
urad urad coding upstream 58297 15478585 ~ 15479868 (+)
LOC110535338 LOC106579503 coding upstream 59943 15375660 ~ 15478222 (+)
LOC110536557 LOC106579543 coding upstream 170622 15342361 ~ 15367543 (+)
LOC110535348 LOC106579510 coding downstream 1235 15539678 ~ 15547074 (+)
rnf6 LOC106579512 coding downstream 48841 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 coding downstream 55973 15594416 ~ 15660363 (+)
spice1 spice1 coding downstream 149817 15688260 ~ 15695114 (+)
boc LOC106579445 coding downstream 208707 15747150 ~ 15800515 (+)
G948005 rpl21 non-coding upstream 8223 15526437 ~ 15529942 (+)
G948000 NA non-coding upstream 17487 15520464 ~ 15520678 (+)
G947999 NA non-coding upstream 19451 15518492 ~ 15518714 (+)
G947980 NA non-coding upstream 46535 15491107 ~ 15491630 (+)
G947984 NA non-coding upstream 47654 15490288 ~ 15490511 (+)
G948049 LOC106579518 non-coding downstream 156747 15695190 ~ 15699638 (+)
G948092 NA non-coding downstream 190247 15728690 ~ 15728894 (+)
G948115 NA non-coding downstream 240542 15778985 ~ 15781343 (+)
G948116 NA non-coding downstream 241190 15779633 ~ 15780297 (+)
spata13 LOC106579541 other upstream 238792 15285042 ~ 15320246 (+)
G947301 LOC106590396 other upstream 650883 14886614 ~ 14887282 (+)
LOC110535322 LOC106579526 other upstream 868409 14665667 ~ 14715423 (+)
G946999 NA other upstream 954116 14582543 ~ 14584049 (+)
G948524 NA other downstream 515622 16054065 ~ 16054638 (+)
sh3kbp1 LOC106579452 other downstream 534973 16073315 ~ 16098499 (+)

Expression


Co-expression Network