G948049 (LOC106579518)


Basic Information

Item Value
gene id G948049
gene name LOC106579518
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15695190 ~ 15699638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1081034
GTTTCAATATAGTTTAATAGCACTGTATAAAAAGGCTTTTTAAATAACTGGTATAtgaatacatttatgtttttgtAATTTGTCattttacattcacttaggttggagtcattaaaactcatttttcaaccactccacaaatgtcttgttaacaaactatagttttggcaagttcggttaagacatctactttgtgcatgacacaagtattttttccaacaattgttcacagacagattatttcacttataattcactgtatcacaattccagtgggtcagaagtttacatacacaaagttgactgtgcctttaaacagcttggaaaattccagaaaatgatgtcatggctttagaagcttcttttAGCTTTagaggctaattgacaacatttggaatgtgtacctgtggatctatttcaaggcttaccttcaaactcagtgcctctttgctttacatcatgggaaaatcaaaaaatcagccaagatctcagaaaaaaaaattgtagacagaccacaggtctggttcatccttgggagcaatttccaaacgcctgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagacgcgttctgtctcctagagatgaacatactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaaccggtacaaaagtatctatatccacagtaaaacgagtcctacatcgacataacctgaaaggccgctcagcaaggaagcagccactgctccaaaaccaccataaaaaagccagactacggtttgcaactgcacatggggacaaagatcatactttttggagaaatgtcctctgctctgatgaaacacaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaagggggaggcttgcaagtcgaagaacaccatcccaactgtgaagcatgggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcacaaaatcgatggcatcatgtggatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcacaaatgggtctttcaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagcccggacctcaatcctatagaaaatgtatgagcagaactgaaaaagtgtgtgcgagcaacaaggaggaatgggccaaaattcacccgacttattgtgggaagcttgtggaaggctacccaaaatatttgacccaagttaaacaatttaaaggcaatgctaccaaatattaattgagtatatgtaaacttctgacccactgggaatgtgatgaaataaataaaatctgaaataaatcattctctctactattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaagacagggaatttttactaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtagctaggcgggacaaccacatatcacagtcttAAGTACATTTTCCTCAGTTATCAGCGAAGTCGGTGCTCGTAGGAAAAGTTGGGTGCAAGGTTTCTATTTAATTCTTTAATTACATTTTGATTGAACTATATCAGCTAAGGTTCTGTGCATTGTTGGACAAACATAGAAGACATAATGCTGCTGTTTAGGTTGATAGATAAATAACTGAACAAGGATTGTGAGTGAGAGAATGAACACGGTCTATGTCTCGCTCTATAGCTGGGATTTAATAACGTTGGAGTCCGCCACACCTCATCATGCTGTACATGTGAAGACAGCTTTCTGGTTCTGAAGAACCTTTTTCAATCATGCGGGTGCCATAATCTATGCCTGAATACCAGCTTGTTGCTTCTGGTATTAAATCCTACCAAGTGAGACTTCAGCCCATTTCGGATGGGATTAGTTTTACCGGGGGAACTCAGGTAATATAATTATGTGCACGAGCACAAatcaccacatctgtcattttagTCCTGTCCGAATCTGCCATGTCAGTCATTTTTACTTGGTAGGAAGGTTGTTATCCCAGCCCCTAAAAACCTACTGTTTTTCAGAAAACTCCCAGGTCCTCTGATAATACTTATCCCGTGTGAATCGTCATCCATGTGTTTTGAGTTAAACAGGTACTGCGCCCAGTATGGGTAAGAATTTGGGAACAAAGTGCTATGCACGTAGCCTACAGATGAATGAAccgttttttttcttcacaaatCAACTTTCCCAGAGTCATACTTCCCTTTTAAATGAAGTGGATGATATTGTGCCAATGAAAAGCTAAATTGCCAGATCCGTCAGGTAATTAAGTGTCTGCGTAGGTTACAGTTCATGGTTCTTACTGATATCCATAGTAGAGCCTCCAGGCTTCCGTCATAACGGTacattttgaatgagaaaaaaaataacatttacagGGGCAGTTTGGTAAAACTAATCCCGTCCGAATGGTCCATGGGGTAAAACGGACATGCTGGGGCAATAATTACATGACCTACGTTCCATAATAATACTAGTCCCGTGCGAATAGGGTTTTTAGAAAACTTCACAGTCCCTCTCAGCCACAGCAGAGATCCTCCTTGTCTTGTAGATGAACTTGACCTGGCAACGTGTCCCTGGGGTCGTGACCCTGAAGCAGCAGCCCCCGTCCTGTAGTGTGGCAGAGTGTCTCTGAGACACCTGCTCCAGCTCTGTCCCGCACGccctcccctgcctctcctctctcatccacaCTGTCTCGCCCTCTACTGCCAAAACCAACACTGTCCCCCCTAAACCCTGCACCTCGCCCACCCCCTGCTCCTGCAGtccagacacacgcacacactgcgGCTCGTGTACCTCAAAGTACTGGCCCCTGTCATAGCCGCGGCAGCTAACACTGATAAGAAAGGAGGCTGGCTCGGAGGTGACAAATTGGAGGACTTCCTCTATCCCGTTGTCGATGGCGACTGGGCCCCTGACCCTTTCTCCCCAGCGTATCTCTGGCCCTCCGAAGATCCGTACTTTCTCTGGGACAAGCTGGAAGCTGTGATGCTCCCCTGGCTTCAGGTAGCTCTCCAGACCCAACATAGTGTCTTTATGCAGCTCCTGTAAGTTAAGCAGGCCCCACCTGACCGGGTCATACTTTACCACAGACAGAACCCTGTGTCTCACCCCAGCATCAAAGCTCTGGGGGCCGAACGCCGGCCGGGCCAGGGTTGAGCAGATGTGCTGGGTGATGGTAGCAATAGGAGCCTGGGAGAGATCTATGGAGGTAGTGTTTTCTTGTGGGTGCACCCTGTCCAGCAGACGTGTGATGCAAAGGCAGAGATCTCTGTACTGGATGGGGAGACCAGCTGGGACTGGGTGTTTGGAGGGAGCTCCGTGTCCCAGTGCTTTGCGGATGACCCGTGCAGGCAGGCCCTGGAAACGGGTGACTCTATGGAGTCTGCGAGAGCGGCAGGGGTACACAGCCCCCTCTTCAGGAGGGGAGAGGCACAGACTGTCCTGAAGAGGGTGGAGATCACGTAGCAACTGAGCTAGTACTGTAACACTCTGTAACAGGCTCTCAGTTCCCCCGTCTGCCCAGCATTCCTCCAACTCCTGGAGAAGCTCTGTCTCCACTCTCTCACTGTCTCGTAACAGACGGACAGCATCCCTAGGTTCCCACAATGATTCCACTGCAGCcccaggatcctccagagcctCTGCCATGCTGTCCCACAGGACCAAGCTAAAGATGTTCCACACTTTGTCTATGTGGTCCCCAGTGTGGAGATGGTCCCCAGCTCGCAGGTGGTGGTCCACAGTGCAGAGGTGGTCCCCAGCTTGCAGGTGGTGGTGGTCCCCAGTGCGGAGAAAGGCCTCAGCCACAGACAGCAGCTTCAGTAACATACATCCCCTCTCAGAGAGCAGCACCCCTAAAAGCAACAAAACAGTTACTGATAGGTAGATAGAGAAGTACCTGATACAAATAGACAAATAAGTAAGTAGTGAGACCTACGCTTTGCTGTGCACTCTGCCACCCTGTTTAGCAGCCTAGAGGCATCCTGGGTCTTACTGAGGAAGAGGGTGACCAGGGCCCTGAGCTGAACGATGTCCCCCACCTCAACCTCCTCCAACAGGCACTCTCTGACGGTCCTCCTGGGCAGACCCACTGCCACCCCCAGCTCACACACATTCAGCCTGGCCCCCTCACCTGGAGCCACAGCCAGCAGGGACAGCACCTGCTGGAGCA

Function

NR:

description
uncharacterized protein LOC110535356 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1081034 True 4412 lncRNA 0.47 2 15695190 15699638
Loading

Neighbor

gene id symbol gene type direction distance location
spice1 spice1 coding upstream 76 15688260 ~ 15695114 (+)
atp8a2 LOC106579514 coding upstream 36253 15594416 ~ 15660363 (+)
rnf6 LOC106579512 coding upstream 101290 15587284 ~ 15593900 (+)
LOC110535348 LOC106579510 coding upstream 148116 15539678 ~ 15547074 (+)
usp12a usp12 coding upstream 160502 15530175 ~ 15534688 (+)
boc LOC106579445 coding downstream 47512 15747150 ~ 15800515 (+)
atp6v1ab LOC106579446 coding downstream 117737 15817375 ~ 15839784 (+)
gramd1c LOC106579449 coding downstream 142210 15841848 ~ 15857765 (+)
zdhhc23b zdhhc23 coding downstream 158881 15858519 ~ 15865400 (+)
sh3kbp1 LOC106579452 coding downstream 373677 16073315 ~ 16098499 (+)
G948011 NA non-coding upstream 156747 15538165 ~ 15538443 (+)
G948005 rpl21 non-coding upstream 165248 15526437 ~ 15529942 (+)
G948000 NA non-coding upstream 174512 15520464 ~ 15520678 (+)
G947999 NA non-coding upstream 176476 15518492 ~ 15518714 (+)
G948092 NA non-coding downstream 29052 15728690 ~ 15728894 (+)
G948115 NA non-coding downstream 79347 15778985 ~ 15781343 (+)
G948116 NA non-coding downstream 79995 15779633 ~ 15780297 (+)
G948318 NA non-coding downstream 127660 15827298 ~ 15828220 (+)
G948347 NA non-coding downstream 194806 15894444 ~ 15894934 (+)
LOC110535338 LOC106579503 other upstream 255328 15375660 ~ 15478222 (+)
spata13 LOC106579541 other upstream 395817 15285042 ~ 15320246 (+)
G947301 LOC106590396 other upstream 807908 14886614 ~ 14887282 (+)
G948524 NA other downstream 354427 16054065 ~ 16054638 (+)
ccl20b LOC100135878 other downstream 510291 16209929 ~ 16211192 (+)
G948587 NA other downstream 623712 16323350 ~ 16326407 (+)

Expression

G948049(LOC106579518) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

G948049(LOC106579518) Expression in each Bioproject

Bar chart with 21 bars.
G948049(LOC106579518) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
End of interactive chart.

Co-expression Network