Gene
RNA
| Item | Value |
|---|---|
| gene id | G948115 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 15778985 ~ 15781343 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | description |
|---|
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1081109 | True | 828 | lncRNA | 0.42 | 2 | 15778985 | 15781343 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| spice1 | spice1 | coding | upstream | 83871 | 15688260 ~ 15695114 (+) |
| atp8a2 | LOC106579514 | coding | upstream | 120048 | 15594416 ~ 15660363 (+) |
| rnf6 | LOC106579512 | coding | upstream | 185085 | 15587284 ~ 15593900 (+) |
| LOC110535348 | LOC106579510 | coding | upstream | 231911 | 15539678 ~ 15547074 (+) |
| usp12a | usp12 | coding | upstream | 244297 | 15530175 ~ 15534688 (+) |
| atp6v1ab | LOC106579446 | coding | downstream | 36032 | 15817375 ~ 15839784 (+) |
| gramd1c | LOC106579449 | coding | downstream | 60505 | 15841848 ~ 15857765 (+) |
| zdhhc23b | zdhhc23 | coding | downstream | 77176 | 15858519 ~ 15865400 (+) |
| sh3kbp1 | LOC106579452 | coding | downstream | 291972 | 16073315 ~ 16098499 (+) |
| map3k15 | map3k15 | coding | downstream | 317262 | 16098605 ~ 16205054 (+) |
| G948092 | NA | non-coding | upstream | 50091 | 15728690 ~ 15728894 (+) |
| G948049 | LOC106579518 | non-coding | upstream | 79347 | 15695190 ~ 15699638 (+) |
| G948011 | NA | non-coding | upstream | 240542 | 15538165 ~ 15538443 (+) |
| G948005 | rpl21 | non-coding | upstream | 249043 | 15526437 ~ 15529942 (+) |
| G948318 | NA | non-coding | downstream | 45955 | 15827298 ~ 15828220 (+) |
| G948347 | NA | non-coding | downstream | 113101 | 15894444 ~ 15894934 (+) |
| G948410 | LOC100194703 | non-coding | downstream | 138742 | 15920085 ~ 15920430 (+) |
| G948413 | LOC100136012 | non-coding | downstream | 141216 | 15922559 ~ 15922830 (+) |
| G948426 | NA | non-coding | downstream | 151849 | 15933192 ~ 15933423 (+) |
| LOC110535338 | LOC106579503 | other | upstream | 339123 | 15375660 ~ 15478222 (+) |
| spata13 | LOC106579541 | other | upstream | 479612 | 15285042 ~ 15320246 (+) |
| G947301 | LOC106590396 | other | upstream | 891703 | 14886614 ~ 14887282 (+) |
| G948524 | NA | other | downstream | 272722 | 16054065 ~ 16054638 (+) |
| ccl20b | LOC100135878 | other | downstream | 428586 | 16209929 ~ 16211192 (+) |
| G948587 | NA | other | downstream | 542007 | 16323350 ~ 16326407 (+) |
| LOC110535372 | mynn | other | downstream | 551714 | 16327393 ~ 16338373 (+) |
