G948116


Basic Information

Item Value
gene id G948116
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15779633 ~ 15780297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1081110
gtggtctctctttatgtagtgttgtggtggtgtgtctctttatgtagtgttgtggtggtgtctctttatgtagtgttgtggtggtgtctctttatgtagtgttgtggtggtgtctctttatgtagtgttgtggtggtgtctctttatgtagtgttgtggtggcgtctctttatgtagtgttgtggcggtgtctctttatgtagtgttgtggtggtgtctctctttatgtagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1081110 True 232 lncRNA 0.43 2 15779633 15780297

Neighbor

gene id symbol gene type direction distance location
spice1 spice1 coding upstream 84519 15688260 ~ 15695114 (+)
atp8a2 LOC106579514 coding upstream 120696 15594416 ~ 15660363 (+)
rnf6 LOC106579512 coding upstream 185733 15587284 ~ 15593900 (+)
LOC110535348 LOC106579510 coding upstream 232559 15539678 ~ 15547074 (+)
usp12a usp12 coding upstream 244945 15530175 ~ 15534688 (+)
atp6v1ab LOC106579446 coding downstream 37078 15817375 ~ 15839784 (+)
gramd1c LOC106579449 coding downstream 61551 15841848 ~ 15857765 (+)
zdhhc23b zdhhc23 coding downstream 78222 15858519 ~ 15865400 (+)
sh3kbp1 LOC106579452 coding downstream 293018 16073315 ~ 16098499 (+)
map3k15 map3k15 coding downstream 318308 16098605 ~ 16205054 (+)
G948092 NA non-coding upstream 50739 15728690 ~ 15728894 (+)
G948049 LOC106579518 non-coding upstream 79995 15695190 ~ 15699638 (+)
G948011 NA non-coding upstream 241190 15538165 ~ 15538443 (+)
G948005 rpl21 non-coding upstream 249691 15526437 ~ 15529942 (+)
G948318 NA non-coding downstream 47001 15827298 ~ 15828220 (+)
G948347 NA non-coding downstream 114147 15894444 ~ 15894934 (+)
G948410 LOC100194703 non-coding downstream 139788 15920085 ~ 15920430 (+)
G948413 LOC100136012 non-coding downstream 142262 15922559 ~ 15922830 (+)
G948426 NA non-coding downstream 152895 15933192 ~ 15933423 (+)
LOC110535338 LOC106579503 other upstream 339771 15375660 ~ 15478222 (+)
spata13 LOC106579541 other upstream 480260 15285042 ~ 15320246 (+)
G947301 LOC106590396 other upstream 892351 14886614 ~ 14887282 (+)
G948524 NA other downstream 273768 16054065 ~ 16054638 (+)
ccl20b LOC100135878 other downstream 429632 16209929 ~ 16211192 (+)
G948587 NA other downstream 543053 16323350 ~ 16326407 (+)
LOC110535372 mynn other downstream 552760 16327393 ~ 16338373 (+)

Expression


Co-expression Network