G948318


Basic Information

Item Value
gene id G948318
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15827298 ~ 15828220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1081340
ATGATCACCCATGTGTTCATTACTGAAACTATTTCTCTGGTACATACAattccttgcaaaagtattcatcccccttagtgtttttcctattttgttgcattacaacctgtaatttaaattgattttttatttgcatttcatgtaatggacatacacaaaatagcccaaattggtgaagtgaaatgaaaaaaacaaCGTGTTTCTAAATagtaaaaaacagaaaagtggtgcgtgcatatgtattcacccctttgctatgaagccactgaaaaagatctggtgcaaccaattaccttcagaagttgcataattagttagattgcacacaggtggactttatttctgtttttcagtctctcggtcccagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1081340 True 368 lncRNA 0.35 2 15827298 15828220

Neighbor

gene id symbol gene type direction distance location
boc LOC106579445 coding upstream 26783 15747150 ~ 15800515 (+)
spice1 spice1 coding upstream 132184 15688260 ~ 15695114 (+)
atp8a2 LOC106579514 coding upstream 168361 15594416 ~ 15660363 (+)
rnf6 LOC106579512 coding upstream 233398 15587284 ~ 15593900 (+)
LOC110535348 LOC106579510 coding upstream 280224 15539678 ~ 15547074 (+)
gramd1c LOC106579449 coding downstream 13628 15841848 ~ 15857765 (+)
zdhhc23b zdhhc23 coding downstream 30299 15858519 ~ 15865400 (+)
sh3kbp1 LOC106579452 coding downstream 245095 16073315 ~ 16098499 (+)
map3k15 map3k15 coding downstream 270385 16098605 ~ 16205054 (+)
ccl20b LOC100135878 coding downstream 381771 16209929 ~ 16211192 (+)
G948115 NA non-coding upstream 45955 15778985 ~ 15781343 (+)
G948116 NA non-coding upstream 47001 15779633 ~ 15780297 (+)
G948092 NA non-coding upstream 98404 15728690 ~ 15728894 (+)
G948049 LOC106579518 non-coding upstream 127660 15695190 ~ 15699638 (+)
G948347 NA non-coding downstream 66224 15894444 ~ 15894934 (+)
G948410 LOC100194703 non-coding downstream 91865 15920085 ~ 15920430 (+)
G948413 LOC100136012 non-coding downstream 94339 15922559 ~ 15922830 (+)
G948426 NA non-coding downstream 104972 15933192 ~ 15933423 (+)
G948448 NA non-coding downstream 123630 15951850 ~ 15952070 (+)
LOC110535338 LOC106579503 other upstream 387436 15375660 ~ 15478222 (+)
spata13 LOC106579541 other upstream 527925 15285042 ~ 15320246 (+)
G948524 NA other downstream 225845 16054065 ~ 16054638 (+)
G948587 NA other downstream 495130 16323350 ~ 16326407 (+)
LOC110535372 mynn other downstream 504837 16327393 ~ 16338373 (+)

Expression


Co-expression Network