G948347


Basic Information

Item Value
gene id G948347
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15894444 ~ 15894934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1081371
GGCTGAGTTAGCTACCAAAGTCAAAGAAGAGCCAAGGAGAGGCTAATCCAAAAGTGATATCGTGAGGTAAATCCACATTGAATTTAGCCAGTTTATCTCCATCACTGTTGACAGTCGCACCGGTAGGAAATAGAGGTTGCAGGCTTCACATCCACACTCGGCACAGCACCTGGTTTCAGTCAGTCTCATTCCGAATCCtgacaatgcacagatgacaacagagagtggcagtggtgtggagaggggagggagg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1081371 True 253 lncRNA 0.49 2 15894444 15894934

Neighbor

gene id symbol gene type direction distance location
zdhhc23b zdhhc23 coding upstream 29044 15858519 ~ 15865400 (+)
gramd1c LOC106579449 coding upstream 36679 15841848 ~ 15857765 (+)
atp6v1ab LOC106579446 coding upstream 54660 15817375 ~ 15839784 (+)
boc LOC106579445 coding upstream 93929 15747150 ~ 15800515 (+)
spice1 spice1 coding upstream 199330 15688260 ~ 15695114 (+)
sh3kbp1 LOC106579452 coding downstream 178381 16073315 ~ 16098499 (+)
map3k15 map3k15 coding downstream 203671 16098605 ~ 16205054 (+)
ccl20b LOC100135878 coding downstream 315057 16209929 ~ 16211192 (+)
tfr1b LOC106579454 coding downstream 346647 16241581 ~ 16253322 (+)
tnk2a LOC106579455 coding downstream 359075 16254009 ~ 16274994 (+)
G948318 NA non-coding upstream 66224 15827298 ~ 15828220 (+)
G948115 NA non-coding upstream 113101 15778985 ~ 15781343 (+)
G948116 NA non-coding upstream 114147 15779633 ~ 15780297 (+)
G948092 NA non-coding upstream 165550 15728690 ~ 15728894 (+)
G948049 LOC106579518 non-coding upstream 194806 15695190 ~ 15699638 (+)
G948410 LOC100194703 non-coding downstream 25151 15920085 ~ 15920430 (+)
G948413 LOC100136012 non-coding downstream 27625 15922559 ~ 15922830 (+)
G948426 NA non-coding downstream 38258 15933192 ~ 15933423 (+)
G948448 NA non-coding downstream 56916 15951850 ~ 15952070 (+)
G948482 NA non-coding downstream 85586 15980520 ~ 15980727 (+)
atp8a2 LOC106579514 other upstream 234982 15594416 ~ 15660363 (+)
rnf6 LOC106579512 other upstream 304668 15587284 ~ 15593900 (+)
LOC110535338 LOC106579503 other upstream 454582 15375660 ~ 15478222 (+)
spata13 LOC106579541 other upstream 595071 15285042 ~ 15320246 (+)
G948524 NA other downstream 159131 16054065 ~ 16054638 (+)
G948587 NA other downstream 428416 16323350 ~ 16326407 (+)
LOC110535372 mynn other downstream 438123 16327393 ~ 16338373 (+)

Expression


Co-expression Network