G948413 (LOC100136012)


Basic Information

Item Value
gene id G948413
gene name LOC100136012
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15922559 ~ 15922830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1081460
aaatggaagaagttcaagatgacggtcaatcaccctcggtctggggctccatgcaagatctcacctcgtggggcattaatgatcatgaggaaggtgagggatcagcccagaactacacggcaggacctggtcaatgacctgaagagagctgggaccacagtctcaaagaaaaccattactaacacactacgccatcatggattaaaatcctgcagtgcacgcaaggtccccctgctcaagccagcgcatgtccaggcccgtctgaagtttgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1081460 True 272 lncRNA 0.52 1 15922559 15922830

Neighbor

gene id symbol gene type direction distance location
zdhhc23b zdhhc23 coding upstream 57159 15858519 ~ 15865400 (+)
gramd1c LOC106579449 coding upstream 64794 15841848 ~ 15857765 (+)
atp6v1ab LOC106579446 coding upstream 82775 15817375 ~ 15839784 (+)
boc LOC106579445 coding upstream 122044 15747150 ~ 15800515 (+)
spice1 spice1 coding upstream 227445 15688260 ~ 15695114 (+)
sh3kbp1 LOC106579452 coding downstream 150485 16073315 ~ 16098499 (+)
map3k15 map3k15 coding downstream 175775 16098605 ~ 16205054 (+)
ccl20b LOC100135878 coding downstream 287161 16209929 ~ 16211192 (+)
tfr1b LOC106579454 coding downstream 318751 16241581 ~ 16253322 (+)
tnk2a LOC106579455 coding downstream 331179 16254009 ~ 16274994 (+)
G948410 LOC100194703 non-coding upstream 2129 15920085 ~ 15920430 (+)
G948347 NA non-coding upstream 27625 15894444 ~ 15894934 (+)
G948318 NA non-coding upstream 94339 15827298 ~ 15828220 (+)
G948115 NA non-coding upstream 141216 15778985 ~ 15781343 (+)
G948116 NA non-coding upstream 142262 15779633 ~ 15780297 (+)
G948426 NA non-coding downstream 10362 15933192 ~ 15933423 (+)
G948448 NA non-coding downstream 29020 15951850 ~ 15952070 (+)
G948482 NA non-coding downstream 57690 15980520 ~ 15980727 (+)
G948486 NA non-coding downstream 61928 15984758 ~ 15985779 (+)
G948494 NA non-coding downstream 81880 16004710 ~ 16004920 (+)
atp8a2 LOC106579514 other upstream 263097 15594416 ~ 15660363 (+)
rnf6 LOC106579512 other upstream 332783 15587284 ~ 15593900 (+)
LOC110535338 LOC106579503 other upstream 482697 15375660 ~ 15478222 (+)
spata13 LOC106579541 other upstream 623186 15285042 ~ 15320246 (+)
G948524 NA other downstream 131235 16054065 ~ 16054638 (+)
G948587 NA other downstream 400520 16323350 ~ 16326407 (+)
LOC110535372 mynn other downstream 410227 16327393 ~ 16338373 (+)

Expression


Co-expression Network