Gene
RNA
| Item | Value |
|---|---|
| gene id | G948448 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 15951850 ~ 15952070 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LOW QUALITY PROTEIN: queuine tRNA-ribosyltransferase accessory subunit 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1081495 | True | 221 | lncRNA | 0.41 | 1 | 15951850 | 15952070 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| zdhhc23b | zdhhc23 | coding | upstream | 86450 | 15858519 ~ 15865400 (+) |
| gramd1c | LOC106579449 | coding | upstream | 94085 | 15841848 ~ 15857765 (+) |
| atp6v1ab | LOC106579446 | coding | upstream | 112066 | 15817375 ~ 15839784 (+) |
| boc | LOC106579445 | coding | upstream | 151335 | 15747150 ~ 15800515 (+) |
| spice1 | spice1 | coding | upstream | 256736 | 15688260 ~ 15695114 (+) |
| sh3kbp1 | LOC106579452 | coding | downstream | 121245 | 16073315 ~ 16098499 (+) |
| map3k15 | map3k15 | coding | downstream | 146535 | 16098605 ~ 16205054 (+) |
| ccl20b | LOC100135878 | coding | downstream | 257921 | 16209929 ~ 16211192 (+) |
| tfr1b | LOC106579454 | coding | downstream | 289511 | 16241581 ~ 16253322 (+) |
| tnk2a | LOC106579455 | coding | downstream | 301939 | 16254009 ~ 16274994 (+) |
| G948426 | NA | non-coding | upstream | 18427 | 15933192 ~ 15933423 (+) |
| G948413 | LOC100136012 | non-coding | upstream | 29020 | 15922559 ~ 15922830 (+) |
| G948410 | LOC100194703 | non-coding | upstream | 31420 | 15920085 ~ 15920430 (+) |
| G948347 | NA | non-coding | upstream | 56916 | 15894444 ~ 15894934 (+) |
| G948318 | NA | non-coding | upstream | 123630 | 15827298 ~ 15828220 (+) |
| G948482 | NA | non-coding | downstream | 28450 | 15980520 ~ 15980727 (+) |
| G948486 | NA | non-coding | downstream | 32688 | 15984758 ~ 15985779 (+) |
| G948494 | NA | non-coding | downstream | 52640 | 16004710 ~ 16004920 (+) |
| G948542 | NA | non-coding | downstream | 136395 | 16088465 ~ 16088974 (+) |
| atp8a2 | LOC106579514 | other | upstream | 292388 | 15594416 ~ 15660363 (+) |
| rnf6 | LOC106579512 | other | upstream | 362074 | 15587284 ~ 15593900 (+) |
| LOC110535338 | LOC106579503 | other | upstream | 511988 | 15375660 ~ 15478222 (+) |
| spata13 | LOC106579541 | other | upstream | 652477 | 15285042 ~ 15320246 (+) |
| G948524 | NA | other | downstream | 101995 | 16054065 ~ 16054638 (+) |
| G948587 | NA | other | downstream | 371280 | 16323350 ~ 16326407 (+) |
| LOC110535372 | mynn | other | downstream | 380987 | 16327393 ~ 16338373 (+) |
