G948494


Basic Information

Item Value
gene id G948494
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16004710 ~ 16004920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1081541
atctttatgtacatattctttatccccttacacttgtgtctataaggtagtagttttggaattgttagctagattacttgttggttattactgcattgtcggaactagaagcacaagcatttcgctacactcacattaacatctgctaaccatgtgtacgtgacaaataaaatttgatttgatttgaatcattTATACCAGTGTTACAGGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1081541 True 211 lncRNA 0.34 1 16004710 16004920

Neighbor

gene id symbol gene type direction distance location
zdhhc23b zdhhc23 coding upstream 139310 15858519 ~ 15865400 (+)
gramd1c LOC106579449 coding upstream 146945 15841848 ~ 15857765 (+)
atp6v1ab LOC106579446 coding upstream 164926 15817375 ~ 15839784 (+)
boc LOC106579445 coding upstream 204195 15747150 ~ 15800515 (+)
spice1 spice1 coding upstream 309596 15688260 ~ 15695114 (+)
sh3kbp1 LOC106579452 coding downstream 68395 16073315 ~ 16098499 (+)
map3k15 map3k15 coding downstream 93685 16098605 ~ 16205054 (+)
ccl20b LOC100135878 coding downstream 205071 16209929 ~ 16211192 (+)
tfr1b LOC106579454 coding downstream 236661 16241581 ~ 16253322 (+)
tnk2a LOC106579455 coding downstream 249089 16254009 ~ 16274994 (+)
G948486 NA non-coding upstream 18931 15984758 ~ 15985779 (+)
G948482 NA non-coding upstream 23983 15980520 ~ 15980727 (+)
G948448 NA non-coding upstream 52640 15951850 ~ 15952070 (+)
G948426 NA non-coding upstream 71287 15933192 ~ 15933423 (+)
G948413 LOC100136012 non-coding upstream 81880 15922559 ~ 15922830 (+)
G948542 NA non-coding downstream 83545 16088465 ~ 16088974 (+)
G948545 NA non-coding downstream 131827 16136747 ~ 16173715 (+)
G948554 NA non-coding downstream 169372 16174292 ~ 16174572 (+)
atp8a2 LOC106579514 other upstream 345248 15594416 ~ 15660363 (+)
rnf6 LOC106579512 other upstream 414934 15587284 ~ 15593900 (+)
LOC110535338 LOC106579503 other upstream 564848 15375660 ~ 15478222 (+)
spata13 LOC106579541 other upstream 705337 15285042 ~ 15320246 (+)
G948524 NA other downstream 49145 16054065 ~ 16054638 (+)
G948587 NA other downstream 318430 16323350 ~ 16326407 (+)
LOC110535372 mynn other downstream 328137 16327393 ~ 16338373 (+)

Expression


Co-expression Network