XLOC_028621 (mdm1)


Basic Information

Item Value
gene id XLOC_028621
gene name mdm1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13551400 ~ 13567516 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055508
ACGCCTCACCAAGGTAACAGCAAAGACTGTAACTGAATCTAATCTCACACACCTCCAAGCGTGTAACAAAAACACTTCTTTTGTTCGCCGACCTCTCTGTGCCCTAGTCACTACCGGCGTAGACTGAAAATGCCTGTCCGTTTCAAGGGAATCAGCGAGTATCGAAGTAAATACAAGGGTCGAACATCAAGATCCAGAAGCGATTCTCCACATCGCAGGATGCGACTGGCAGGACTGCGCTCTGACCAGTCAGGAATTACTCAGGAACCCCAGTTCATATCCAAAAGGAGAGTGCCATTTTATCCATCTCAGGTATCCAGTTCTTTCCGATGGGAAGGACGTGATCATTCTCAACAGCAGCTGGAGAAGAGCAGGTCTCCAGCTGTCTCACCTGTGCTCAGGGCCACTAGTGCAGAAAGACAGGTGACCCCTCTTGCCCCTAGAGACCCACCAGAGGGCACCACTGCCCCATCTCAACCACCACAAGCAGAAGCAGCTCAGACATCCACCTTCGCAGTACAAAAGCAGAAACAAGCACTAAATGGAATTAACCATGCACTGCGGATGAAAGCAGGCCTGAGGTCAGAGCATCAGAGAAATGGCTTGAACTCCGAATACCAGAGACAGTTCATGTGGAAAACACCTGTAGCCGAATCGCCCCTGCTTGCTGCACATCAGATGTTATACAGTAACAACAGAGCCATCCCACCCTTCAAAACAAACCCAGTGATTATGGAGAGCGAGTACAAGAGAAGTTTCAAAGGATCGCCTCTTCCCAGGCCACCACGCTTGAGGCGAGATGTTGAACAGTATGAGGTCCCAGAGTTTCTAACAGAGAGCAAAACCCCAGAGAAGAGTaagagaaagaagaagaagaaggagcgACCACACAGCAGGAAGTCAAGCCCAGAACAAGAAGTTGCCTATCTACAGCAACAGGAAGTGAAATCACCCCACAACCTGAAAGACCCTTCACCAAAGGTTATGAGAAAAGGGAAAACTGAGTACAGATCCAACTTTCATTCACCCCTCCAGTACAGCTACAAAGATGGAGCATGGCTGAAGATTAAATCTGCAAAAGAGGAGGTAAAGGAGCTACGCGAGAGGGCGGAGGCCTACAAGAAAAGGGCTTGGGGAACTCATTTTTCTCGGCAACACTTAAATCAGATTTTATCAGATCAAAACTGGATGTGGGAGCCTTCCAGCGGCACCTCCTCATCCTCCATTGAATCTGAGGCCTGCAGAAGCACAAGCCATATTATTGAGGCTCTGGACCTGGCCAGGGCTGGCAGTGTCAGGGAAAGCTCTAGCCCTGGACATTCTGCTTCTGTGGTGGTCAGCAGGAGGAGCTCTTCTGGGGAAGTGGGTCTTCCCGAAGAACCCACCCTGCCAGTGCAGAGAAAGCTGGCATGGGATGAAGAAGAGCAGCTTGGAGAGAGAGAAGAGATTGTACAGGACAGGCTAACAGATAAGGAAGGGAAAACAAGAAATGAGAACGGGATGGAGAGAAATGAGAGGTTAAATTCATTGGAAAGTGAGTCATTATCATCGGCAGAGGAGGGGTCTGAAGCTTCCGTTAATGGGGGCAGATTGCCAACCCCTAAACTCAAGACCATGCAGACTGTACAAAGAACACATCACGATCGAACCACTCCATCCATTGATTTCAATCTCCATTATATTGCGAAGGCTGCGAATGGAAGCTTGCCTCGTTCCTCTCCAGTCGCTGGCCTGACTACTGTAGATGTGCTGCCCATGCGAGAAGATGTCTGGTCTGATGAAGAGGTGACAGATTACAGAAGTTTAAAACCTCCCAAGCCATCACGAAAACAACAGAGCAGTCAGCGTCACAAAGCCAATGCTGCTCCACCTGCCAACAGAATCCAGGGCACAATGAGAAACGCGGAATTTCAGCATAATGGTAACCTGGGAATTTTTCGGCCGGAGCTGTTTGTGCTTCCTCAATCTGATTCTGCTTTGTCAGATAATgATGACAAGATGTCTCAGATCTCCTCCAGATCAGCAGCTTCATGCTCCATGGCGTCTGAGGTTTTGGGTCGCGCTCAGAGACGAAAACAGGAATTTTGGGGAAAAAGCTAATCTGTCAAAGCACACTTCAACTATGCAAAAACTGAAAAATGACGTTCTCAGGATGCAAAA
>TCONS_00055509
ATGCCTGTCCGTTTCAAGGGAATCAGCGAGTATCGAAGTAAATACAAGGGTCGAACATCAAGATCCAGAAGCGATTCTCCACATCGCAGGATGCGACTGGCAGGACTGCGCTCTGACCAGTCAGGAATTACTCAGGAACCCCAGTTCATATCCAAAAGGAGAGTGCCATTTTATCCATCTCAGGTATCCAGTTCTTTCCGATGGGAAGGACGTGATCATTCTCAACAGCAGCTGGAGAAGAGCAGGTCTCCAGCTGTCTCACCTGTGCTCAGGGCCACTAGTGCAGAAAGACAGGTGACCCCTCTTGCCCCTAGAGACCCACCAGAGGGCACCACTGCCCCATCTCAACCACCACAAGCAGAAGCAGCTCAGACATCCACCTTCGCAGTACAAAAGCAGAAACAAGCACTAAATGGAATTAACCATGCACTGCGGATGAAAGCAGGCCTGAGGTCAGAGCATCAGAGAAATGGCTTGAACTCCGAATACCAGAGACAGTTCATGTGGAAAACACCTGTAGCCGAATCGCCCCTGCTTGCTGCACATCAGATGTTATACAGTAACAACAGAGCCATCCCACCCTTCAAAACAAACCCAGTGATTATGGAGAGCGAGTACAAGAGAAGTTTCAAAGGATCGCCTCTTCCCAGGCCACCACGCTTGAGGCGAGATGTTGAACAGTATGAGGTCCCAGAGTTTCTAACAGAGAGCAAAACCCCAGAGAAGAGTaagagaaagaagaagaagaaggagcgACCACACAGCAGGAAGTCAAGCCCAGAACAAGAAGTTGCCTATCTACAGCAACAGGAAGTGAAATCACCCCACAACCTGAAAGACCCTTCACCAAAGGTTATGAGAAAAGGGAAAACTGAGTACAGATCCAACTTTCATTCACCCCTCCAGTACAGCTACAAAGATGGAGCATGGCTGAAGATTAAATCTGCAAAAGAGGAGGGGTGTGATGGTTTTCACGAGTGGTATCATGAGGTAAAGGAGCTACGCGAGAGGGCGGAGGCCTACAAGAAAAGGGCTTGGGGAACTCATTTTTCTCGGCAACACTTAAATCAGATTTTATCAGATCAAAACTGGATGTGGGAGCCTTCCAGCGGCACCTCCTCATCCTCCATTGAATCTGAGGCCTGCAGAAGCACAAGCCATATTATTGAGGCTCTGGACCTGGCCAGGGCTGGCAGTGTCAGGGAAAGCTCTAGCCCTGGACATTCTGCTTCTGTGGTGGTCAGCAGGAGGAGCTCTTCTGGGGAAGTGGGTCTTCCCGAAGAACCCACCCTGCCAGTGCAGAGAAAGCTGGCATGGGATGAAGAAGAGCAGCTTGGAGAGAGAGAAGAGATTGTACAGGACAGGCTAACAGATAAGGAAGGGAAAACAAGAAATGAGAACGGGATGGAGAGAAATGAGAGGTTAAATTCATTGGAAAGTGAGTCATTATCATCGGCAGAGGAGGGGTCTGAAGCTTCCGTTAATGGGGGCAGATTGCCAACCCCTAAACTCAAGACCATGCAGACTGTACAAAGAACACATCACGATCGAACCACTCCATCCATTGATTTCAATCTCCATTATATTGCGAAGGCTGCGAATGGAAGCTTGCCTCGTTCCTCTCCAGTCGCTGGCCTGACTACTGTAGATGTGCTGCCCATGCGAGAAGATGTCTGGTCTGATGAAGAGGTGACAGATTACAGAAGTTTAAAACCTCCCAAGCCATCACGAAAACAACAGAGCAGTCAGCGTCACAAAGCCAATGCTGCTCCACCTGCCAACAGAATCCAGGGCACAATGAGAAACGCGGAATTTCAGCATAATGGTAACCTGGGAATTTTTCGGCCGGAGCTGTTTGTGCTTCCTCAATCTGATTCTGCTTTGTCAGATAATgATGACAAGATGTCTCAGATCTCCTCCAGATCAGCAGCTTCATGCTCCATGGCGTCTGAGGTTTTGGGTCGCGCTCAGAGACGAAAACAGGAATTTTGGGGAAAAAGCTAA
>TCONS_00055510
GGAGGAACAGTGAGCGCGCGCTGCAGGCTAAAGAAATGCTTTCGGTTTTGAAATTTTTTCCAGTGTTTACATTTAGGGTATGCAATATGTATTAAAACGAGTTACTGTAAGACAAGGCTTTCACTTTGCCGAAAACAAATCGAAACGACTTGATTGTTGAGAAGCACGAAACACGCGAACGGGAATCAGCGAGTATCGAAGTAAATACAAGGGTCGAACATCAAGATCCAGAAGCGATTCTCCACATCGCAGGATGCGACTGGCAGGACTGCGCTCTGACCAGTCAGGAATTACTCAGGAACCCCAGTTCATATCCAAAAGGAGAGTGCCATTTTATCCATCTCAGGTATCCAGTTCTTTCCGATGGGAAGGACGTGATCATTCTCAACAGCAGCTGGAGAAGAGCAGGTCTCCAGCTGTCTCACCTGTGCTCAGGGCCACTAGTGCAGAAAGACAGGTGACCCCTCTTGCCCCTAGAGACCCACCAGAGGGCACCACTGCCCCATCTCAACCACCACAAGCAGAAGCAGCTCAGACATCCACCTTCGCAGTACAAAAGCAGAAACAAGCACTAAATGGAATTAACCATGCACTGCGGATGAAAGCAGGCCTGAGGTCAGAGCATCAGAGAAATGGCTTGAACTCCGAATACCAGAGACAGTTCATGTGGAAAACACCTGTAGCCGAATCGCCCCTGCTTGCTGCACATCAGATGTTATACAGTAACAACAGAGCCATCCCACCCTTCAAAACAAACCCAGTGATTATGGAGAGCGAGTACAAGAGAAGTTTCAAAGGATCGCCTCTTCCCAGGCCACCACGCTTGAGGCGAGATGTTGAA

Function

symbol description
mdm1 Predicted to enable microtubule binding activity. Predicted to be involved in negative regulation of centriole replication. Predicted to be located in centriole; centrosome; and nucleus. Is expressed in brain; neural tube; pronephric duct; and tail bud. Orthologous to human MDM1 (Mdm1 nuclear protein).

GO:

id name namespace
GO:0046600 negative regulation of centriole replication biological_process
GO:0005813 centrosome cellular_component
GO:0005814 centriole cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-041210-117 Predicted to enable microtubule binding activity. Predicted to be involved in negative regulation of centriole replication. Predicted to be located in centriole; centrosome; and nucleus. Is expressed in brain; neural tube; pronephric duct; and tail bud. Orthologous to human MDM1 (Mdm1 nuclear protein).

Ensembl:

ensembl_id ENSDARG00000045675

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055508 False 2160 mRNA 0.49 13 13551400 13567516
TCONS_00055509 False 2004 mRNA 0.49 14 13551460 13567387
TCONS_00055510 True 841 processed_transcript 0.49 5 13563667 13567275

Neighbor

gene id symbol gene type direction distance location
XLOC_028620 il22 coding downstream 2594 13544595 ~ 13548806 (-)
XLOC_028619 il26 coding downstream 12686 13535054 ~ 13538714 (-)
XLOC_028618 ifng1r coding downstream 33019 13517446 ~ 13518381 (-)
XLOC_028617 ifng1 coding downstream 41454 13507584 ~ 13509946 (-)
XLOC_028616 si:ch211-266a5.12 coding downstream 48851 13499264 ~ 13502549 (-)
XLOC_028622 opn1sw1 coding upstream 10149 13577665 ~ 13580348 (-)
XLOC_028623 irf5 coding upstream 38084 13605600 ~ 13614936 (-)
XLOC_028624 NA coding upstream 58466 13625982 ~ 13626833 (-)
XLOC_028625 BX897729.1 coding upstream 131469 13698985 ~ 13723156 (-)
XLOC_028626 NA coding upstream 313020 13880536 ~ 13889482 (-)
XLOC_028615 NA non-coding downstream 61319 13489763 ~ 13490081 (-)
XLOC_028614 NA non-coding downstream 72579 13477229 ~ 13478821 (-)
XLOC_028613 NA non-coding downstream 158230 13345672 ~ 13393170 (-)
XLOC_028611 NA non-coding downstream 527232 13023507 ~ 13024168 (-)
XLOC_028609 NA non-coding downstream 561702 12988978 ~ 12989698 (-)
XLOC_028631 NA non-coding upstream 401645 13969161 ~ 13979713 (-)
XLOC_028632 NA non-coding upstream 539159 14106675 ~ 14162327 (-)
XLOC_028633 CR786571.2 non-coding upstream 599526 14167042 ~ 14170406 (-)

Expression


Co-expression Network