G948542


Basic Information

Item Value
gene id G948542
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16088465 ~ 16088974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1081593
ccactgtcaaacatggtggtggcagcatcatgccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatagccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaagaaggaatgggaaaaaatttcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1081593 True 443 lncRNA 0.43 2 16088465 16088974

Neighbor

gene id symbol gene type direction distance location
zdhhc23b zdhhc23 coding upstream 223065 15858519 ~ 15865400 (+)
gramd1c LOC106579449 coding upstream 230700 15841848 ~ 15857765 (+)
atp6v1ab LOC106579446 coding upstream 248681 15817375 ~ 15839784 (+)
boc LOC106579445 coding upstream 287950 15747150 ~ 15800515 (+)
spice1 spice1 coding upstream 393351 15688260 ~ 15695114 (+)
map3k15 map3k15 coding downstream 9631 16098605 ~ 16205054 (+)
ccl20b LOC100135878 coding downstream 121017 16209929 ~ 16211192 (+)
tfr1b LOC106579454 coding downstream 152607 16241581 ~ 16253322 (+)
tnk2a LOC106579455 coding downstream 165035 16254009 ~ 16274994 (+)
adipoqa LOC106579495 coding downstream 199970 16288944 ~ 16290744 (+)
G948494 NA non-coding upstream 83545 16004710 ~ 16004920 (+)
G948486 NA non-coding upstream 102686 15984758 ~ 15985779 (+)
G948482 NA non-coding upstream 107738 15980520 ~ 15980727 (+)
G948448 NA non-coding upstream 136395 15951850 ~ 15952070 (+)
G948426 NA non-coding upstream 155042 15933192 ~ 15933423 (+)
sh3kbp1 LOC106579452 non-coding downstream 1430 16073315 ~ 16098499 (+)
G948545 NA non-coding downstream 47773 16136747 ~ 16173715 (+)
G948554 NA non-coding downstream 85318 16174292 ~ 16174572 (+)
G948583 NA non-coding downstream 177172 16266146 ~ 16278483 (+)
G948524 NA other upstream 33827 16054065 ~ 16054638 (+)
atp8a2 LOC106579514 other upstream 429003 15594416 ~ 15660363 (+)
rnf6 LOC106579512 other upstream 498689 15587284 ~ 15593900 (+)
G948587 NA other downstream 234376 16323350 ~ 16326407 (+)
LOC110535372 mynn other downstream 244083 16327393 ~ 16338373 (+)
LOC110535387 LOC106579475 other downstream 454841 16543682 ~ 16565783 (+)
G948710 NA other downstream 465226 16554200 ~ 16601892 (+)

Expression


Co-expression Network