XLOC_028622 (opn1sw1)


Basic Information

Item Value
gene id XLOC_028622
gene name opn1sw1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13577665 ~ 13580348 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055511
CCTCTCCGCATCGGTTCAGTCAGGCTCCTTGTTGACTCCACCAGGACACACAGAAGAAGGCCTCCAACGGCACAACCATGGACGCGTGGGCCGTTCAATTCGGAAATGCTTCCAAAGTCAGCCCCTTCGAGGGCGAACAATACCACATTGCCCCCAAATGGGCGTTCTACCTGCAGGCAGCTTTCATGGGCTTTGTATTTATCGTGGGCACACCTATGAACGGAATCGTCCTCTTCGTCACGATGAAGTACAAGAAACTCAGGCAGCCTCTCAACTACATCTTGGTAAACATCTCCCTAGCAGGCTTCATTTTCGACACGTTCTCTGTAAGTCAAGTATTCGTCTGCGCTGCTAGAGGTTATTACTTCCTTGGGTATACGTTGTGTGCGATGGAAGCGGCAATGGGATCGATTGCAGGTCTTGTGACGGGATGGTCCTTGGCTGTTCTGGCTTTCGAGAGATATGTGGTCATCTGCAAACCCTTCGGAAGCTTCAAATTCGGACAAGGCCAGGCTGTTGGAGCTGTGGTGTTCACCTGGATCATTGGTACCGCCTGTGCTACTCCTCCCTTCTTTGGATGGAGCAGATACATTCCCGAGGGTCTTGGCACTGCCTGCGGACCTGACTGGTACACAAAAAGCGAGGAGTACAACTCAGAGAGCTACACTTACTTCCTTCTCGTCACCTGCTTCATGATGCCAATGACCATCATCATTTTCTCCTACTCACAGCTCTTGGGAGCCCTGCGCGCCGTTGCAGCCCAGCAGGCCGAGTCAGAGTCCACCCAGAAGGCAGAGAGAGAAGTGTCCAGGATGGTTGTTGTAATGGTTGGCTCTTTCGTGCTTTGCTATGCCCCTTATGCCGTCACCGCCATGTATTTTGCCAATTCCGATGAGCCAAACAAGGATTACCGCCTGGTCGCCATCCCTGCTTTCTTCTCAAAGAGCTCCTGCGTGTATAATCCCCTAATCTACGCCTTCATGAACAAACAGTTCAACGCCTGCATCATGGAGACTGTATTTGGCAAGAAGATTGATGAGTCCTCAGAGGTTTCCAGCAAGACCGAAACCTCATCTGTGTCTGCATAAATACTCCCGCAGCACATTTACAATCCGTCTGGACCAGCTTTGCGGTTATCCTCCCCCTGATTGTTCAAATCCCGTAACTTTACACAATGTCGAGGGCCAAGGGAGCCCCTTTGGATGGCCAAACTGGGGGATGATATCCGACCATCCTTTCTGTGCAGAACTGGTACACCTATgtctattttatattttgtaaagaAAAACATTGCCATTTTATGCTAAAACGATGCATTACGCATTGAGGACAaagtagaatatttaatttttaacttgcaagtaaaaaattaccaaaaaaaaaaaagggataaTAATATGAGACACCCTCTCATGTGAATGGACTTGGGCAATCTGAAAAAGGAAATTCCTGACTTTATTATAAATATTCTATGGACTGTCATATAAGGCGTTGTGCAATAGGCATCAAACCTAAAAGAACGTACTTTAGGCCAGCTTTCTGGTTGGCTTATCCAATATACATAATTAGGATCGTCAGGAATTATCCAAGTCCATCCGCTTTTGCAGCTCAGGAATCGTTCACTGTCTGCTCCTGTCCAATCACTGGCTTTGGATCTCTGTTATCTGTATCAATATTACCTCTGTACATGTTCTGTTGTAATTAGACATGCAGTGTGCATGCATTTGTACATGTGCCCTGTTTTTAGAGTTAATAAAGATTTATATTGTTTGATGCA

Function

symbol description
opn1sw1 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; endocrine system; heart; photoreceptor cell; and visual system. Human ortholog(s) of this gene implicated in blue color blindness. Orthologous to human OPN1SW (opsin 1, short wave sensitive).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-991109-25 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; endocrine system; heart; photoreceptor cell; and visual system. Human ortholog(s) of this gene implicated in blue color blindness. Orthologous to human OPN1SW (opsin 1, short wave sensitive).

Ensembl:

ensembl_id ENSDARG00000045677

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055511 True 1777 mRNA 0.46 5 13577665 13580348

Neighbor

gene id symbol gene type direction distance location
XLOC_028621 mdm1 coding downstream 10149 13551400 ~ 13567516 (-)
XLOC_028620 il22 coding downstream 28859 13544595 ~ 13548806 (-)
XLOC_028619 il26 coding downstream 38951 13535054 ~ 13538714 (-)
XLOC_028618 ifng1r coding downstream 59284 13517446 ~ 13518381 (-)
XLOC_028617 ifng1 coding downstream 67719 13507584 ~ 13509946 (-)
XLOC_028623 irf5 coding upstream 25252 13605600 ~ 13614936 (-)
XLOC_028624 NA coding upstream 45634 13625982 ~ 13626833 (-)
XLOC_028625 BX897729.1 coding upstream 118637 13698985 ~ 13723156 (-)
XLOC_028626 NA coding upstream 300188 13880536 ~ 13889482 (-)
XLOC_028627 gxylt1b coding upstream 312425 13892773 ~ 13902188 (-)
XLOC_028615 NA non-coding downstream 87584 13489763 ~ 13490081 (-)
XLOC_028614 NA non-coding downstream 98844 13477229 ~ 13478821 (-)
XLOC_028613 NA non-coding downstream 184495 13345672 ~ 13393170 (-)
XLOC_028611 NA non-coding downstream 553497 13023507 ~ 13024168 (-)
XLOC_028609 NA non-coding downstream 587967 12988978 ~ 12989698 (-)
XLOC_028631 NA non-coding upstream 388813 13969161 ~ 13979713 (-)
XLOC_028632 NA non-coding upstream 526327 14106675 ~ 14162327 (-)
XLOC_028633 CR786571.2 non-coding upstream 586694 14167042 ~ 14170406 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_04213624_04215676 OPN1SW, OPN1SW1 coding CI01000020 null 4213529 ~ 4216493 (+)