G948554


Basic Information

Item Value
gene id G948554
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16174292 ~ 16174572 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1081616
gacttgattacatacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttctcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgattcttcacaaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggca

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1081616 True 281 lncRNA 0.35 1 16174292 16174572

Neighbor

gene id symbol gene type direction distance location
sh3kbp1 LOC106579452 coding upstream 75793 16073315 ~ 16098499 (+)
zdhhc23b zdhhc23 coding upstream 308892 15858519 ~ 15865400 (+)
gramd1c LOC106579449 coding upstream 316527 15841848 ~ 15857765 (+)
atp6v1ab LOC106579446 coding upstream 334508 15817375 ~ 15839784 (+)
boc LOC106579445 coding upstream 373777 15747150 ~ 15800515 (+)
ccl20b LOC100135878 coding downstream 35419 16209929 ~ 16211192 (+)
tfr1b LOC106579454 coding downstream 67009 16241581 ~ 16253322 (+)
tnk2a LOC106579455 coding downstream 79437 16254009 ~ 16274994 (+)
adipoqa LOC106579495 coding downstream 114372 16288944 ~ 16290744 (+)
LOC110535372 mynn coding downstream 152821 16327393 ~ 16338373 (+)
G948545 NA non-coding upstream 577 16136747 ~ 16173715 (+)
G948542 NA non-coding upstream 85318 16088465 ~ 16088974 (+)
G948494 NA non-coding upstream 169372 16004710 ~ 16004920 (+)
G948486 NA non-coding upstream 188513 15984758 ~ 15985779 (+)
G948583 NA non-coding downstream 91574 16266146 ~ 16278483 (+)
G948577 LOC106579456 non-coding downstream 123784 16298356 ~ 16298602 (+)
G948626 LOC106579456 non-coding downstream 124366 16298938 ~ 16299177 (+)
G948630 NA non-coding downstream 125304 16299876 ~ 16300305 (+)
G948524 NA other upstream 119654 16054065 ~ 16054638 (+)
atp8a2 LOC106579514 other upstream 514830 15594416 ~ 15660363 (+)
rnf6 LOC106579512 other upstream 584516 15587284 ~ 15593900 (+)
G948587 NA other downstream 148778 16323350 ~ 16326407 (+)
LOC110535387 LOC106579475 other downstream 369243 16543682 ~ 16565783 (+)
G948710 NA other downstream 379628 16554200 ~ 16601892 (+)

Expression


Co-expression Network