XLOC_028623 (irf5)


Basic Information

Item Value
gene id XLOC_028623
gene name irf5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13605600 ~ 13614936 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055512
ACAGAGAGAGCGTCTAGAGAACACACCACTTCCGTTTACATTAGCCCCTGTCATCCGGAAGGGTGGTACCTGTTCAACTTCTGCAAACACGTCTTGTGTCGTCTCAAGCCTGTAAAAAACAATATGGATATGAGCAGGTCCTGCTGGAGAGGCGCGATCAGTCAGTGCGAGCTTGATCTGCACTAAGGACGTTCAGACGCGGATCGAACCTTCACCTGGATATATGCGTCCGTCAGGTAAACGCTGATTCACCGTTTGGACACTTTTGCGTGCAGTTGACCTAAAGAACAGTGTTCACCATCACTACCTCCTCCGACCTCTTTGCTGTCCAGCACCATGAGTGGTCAACCACGGAGGATCCGTCTGAAGCCATGGCTGCTGGCACAGATCAACAGCGGGAAATACCCAGGACTGCATTGGCTCAATCAAGAGCGTAGACTCTTTCGGATCCCTTGGAGACATGCCACCCGTCATATGCCTACCCTGGAGGAGGAGAACACTATTTTTAAGGCTTGGGCTCTGGAAACCGGCAAGTACCAGGAAGGAATAGATGAGCCTGATCCAGCCAAATGGAAAGCTAACCTCCGCTGTGCCCTAAACAAAAGTCGGGAGTTCAGACTCAACTACGATGGCACTAAGGACACCCCCGTGCAGCCTTATAAGATCTATGAGGTGTGCGATCAGTCAGTCAATGGAGATGCCGTAGAGGATGAGGAAGAAGAGCTACAAAACTTTGTCCACCTTTCCATTGACCCCAGAGTGGGCGAACCTTCCAACTACCCAGCGTACCCTCCTAGAGTTGACGTTCCCTTTACTTCTCCGATTGGTGACAGTTATAATCCTGCCCACCACAACCCTCCAATGAACCTCATAGGAGACATTCACAATAACCCTAATGGAGGTGCTTCTATGGTCGCTCATCTGGCCCAGCCTAGCACTGGACCTTCTGAATTTCCCAGTCAGAGAGCTATCAAAGTTGAACAAGGAGCATTTCCTATTCATGGCGGCGGACTGCAGAATGGTATGGGAATGGGGACTGGAGTCATACCACCTCCTGTTCTTCAAGATGTAGTTACTCATCCTGTTGGACCTCCAGCCATAGTGGACAGCCCAATGCAGGAGGTGCCATCTCAAGCAGAGAACCAGATTCATCCCTGCATCTCAGAATTGCTGAGCAGCCCACACATGCTGCCCTTAACTGATCTGGATATCAAGTTCCAGTATAGGGGTCGGACGGCTGGTTCTCTGACGGTCAGTAACCCTCAGGGTTGTAGACTTTACTACGGTAACCTGGCGCCCACACTGGAGCAGGTGGCGCTGTTTGGTCCAGTCACTCTGCAGCAGGTGCTGTTTCCAGGAACGGCTGAGATCCAGAACGAGAAGCAGAGGTTCTACACCGACCATCTGCTGGACGTAATGGACCGAGGGCTGATTTTGGAGATCACGGGACAGGATATCTACGCCATCCGACTGTGCCAGTGTAAAGTGTTCTGGTCTGGGCCCGGTGTACTCGAGCAGGGTCCACCCAATCCAATGGAAAGAGAGATAAGGATCAGGGTCTTCAGTCTGAACAAGTTCCTTCAGGCTCTCATTTTGTATCAGAAAGGAGAGGCGCCCACTCCACCACCCTTTGAGATCTACTTCTGCTTTGGGGAAGACTGGCCTGACCGAAAGCCTAAGGAGAAAAAGCTCATCATTGTCCAGGTGGTTCCAGTTGTTGCCAGAATCCTTACCGAGATGTTTTCAGGTGAGCTCTCGTGGTCTACAGACAGCATTCGGTTGCAGATCTCCAACCCCGATTTAAAGGACCATACAGTGGAGCAGTTCAAAGAGATTCACAGACTTTTGCAGAGTCAAAGCGCACATCCCAACTGGCCGACTAACTGAAAGGAGAGACCATTATTATAGTTCTCATTCAAATTTGAGGTCCTTTCGGCACCTTTGAACAACAGAATAGGGAGGTGGCCTCAAATTTGCCTGAGTGAAAACATTTCCATAGGATAAACTGACCACTTGACATTtcttttctaacattttttttgtttgttgtctttaTGTAAACTTgtcttttaaaatgatatttcaaTAAATACCATTGCAGTATTTTAAA
>TCONS_00055513
AAAACAATATGGATATGAGCAGGTCCTGCTGGAGAGGCGCGATCAGTCAGTGCGAGCTTGATCTGCACTAAGGACGTTCAGACGCGGATCGAACCTTCACCTGGATATATGCGTCCGTCAGGTAAACGCTGATTCACCGTTTGGACACTTTTGCGTGCAGTTGACCTAAAGAACAGTGTTCACCATCACTACCTCCTCCGACCTCTTTGCTGTCCAGCACCATGAGTGGTCAACCACGGAGGATCCGTCTGAAGCCATGGCTGCTGGCACAGATCAACAGCGGGAAATACCCAGGACTGCATTGGCTCAATCAAGAGCGTAGACTCTTTCGGATCCCTTGGAGACATGCCACCCGTCATATGCCTACCCTGGAGGAGGAGAACACTATTTTTAAGGCTTGGGCTCTGGAAACCGGCAAGTACCAGGAAGGAATAGATGAGCCTGATCCAGCCAAATGGAAAGCTAACCTCCGCTGTGCCCTAAACAAAAGTCGGGAGTTCAGACTCAACTACGATGGCACTAAGGACACCCCCGTGCAGCCTTATAAGATCTATGAGGTGTGCGATCAGTCAGTCAATGGAGATGCCGTAGAGGATGAGGAAGAAGAGCTACAAAACTTTGTCCACCTTTCCATTGACCCCAGAGTGGGCGAACCTTCCAACTACCCAGCGTACCCTCCTAGAGTTGACGTTCCCTTTACTTCTCCGATTGGTGACAGTTATAATCCTGCCCACCACAACCCTCCAATGAACCTCATAGGAGACATTCACAATAACCCTAATGGAGGTGCTTCTATGGTCGCTCATCTGGCCCAGCCTAGCACTGGACCTTCTGAATTTCCCAGTCAGAGAGCTATCAAAGTTGAACAAGGAGCATTTCCTATTCATGGCGGCGGACTGCAGAATGGTATGGGAATGGGGACTGGAGTCATACCACCTCCTGTTCTTCAAGATGTAGTTACTCATCCTGTTGGACCTCCAGCCATAGTGGACAGCCCAATGCAGGAGGTGCCATCTCAAGCAGAGAACCAGATTCATCCCTGCATCTCAGAATTGCTGAGCAGCCCACACATGCTGCCCTGTAAGCCTCTATTGCCTCATTCTTCTGGATATTAGACATGACTAAATCTCAGGGAAGAAAGTAGTCCCTCCTGTTCATTTTGAGTAATGCTGATGTTAAATGACTTTTTAAGGGGTGTGTGttaagcaggggtgtcaaacctGTTCCtctgtcctgcaaagtttagcttcaGCCCTAATTAATTGTGCCTGAAGTAGCTATTCATGGTCTTCAGATTCATTAGAAATATCTAGGGATGTGTGTTGGGGATCAAATCTCCAGAACGTCGGCTCTCCAGTTGCAGGATTGGTATTAAGGGACTAAAATCAACCTATAGTGCACAACGTAGTTCTATTATTATGAAAACGTCAGTAGTTACATTGGAAGTGCAATATTTAAATCGCAGTTCATCCAAAAAGGAAAGGGGTGTCATCATTCTCACTTCTTTTGTGGTCCAAAATTGAAATGAGTATGTTAGGCTTAATATTCATgctgcttgtttttacacaatggGAAGTGAATACTGAGCCAAATTGATGTTCATTGTTTTTTTACCCCTACTTCTCTAGTAACTGATCTGGATATCAAGTTCCAGTATAGGGGTCGGACGGCTGGTTCTCTGACGGTCAGTAACCCTCAGGGTTGTAGACTTTACTACGGTAACCTGGCGCCCACACTGGAGCAGGTGGCGCTGTTTGGTCCAGTCACTCTGCAGCAGGTGCTGTTTCCAGGAACGGCTGAGATCCAGAACGAGAAGCAGAGGTTCTACACCGACCATCTGCTGGACGTAATGGACCGAGGGCTGATTTTGGAGATCACGGGACAGGATATCTACGCCATCCGACTGTGCCAGTGTAAAGTGTTCTGGTCTGGGCCCGGTGTACTCGAGCAGGGTCCACCCAATCCAATGGAAAGAGAGATAAGGATCAGGGTCTTCAGTCTGAACAAGTTCCTTCAGGCTCTCATTTTGTATCAGAAAGGAGAGGCGCCCACTCCACCACCCTTTGAGATCTACTTCTGCTTTGGGGAAGACTGGCCTGACCGAAAGCCTAAGGAGAAAAAGCTCATCATTGTCCAGGTGGTTCCAGTTGTTGCCAGAATCCTTACCGAGATGTTTTCAGGTGAGCTCTCGTGGTCTACAGACAGCATTCGGTTGCAGATCTCCAACCCCGATTTAAAGGACCATACAGTGGAGCAGTTCAAAGAGATTCACAGACTTTTGCAGAGTCAAAGCGCACATCCCAACTGGCCGACTAACTGAAAGGAGAGACCATTATTATAGTTCTCATTCAAATTTGAGGTCCTTTCGGCACCTTTGAACAACAGAATAGGGAGGTGGCCTCAAATTTGCCTGAGTGAAAACATTTCCATAGGATAAACTGACCACTTGACATTtcttttctaacattttttttgtttgttgtctttaTGTAAACTTgtcttttaaaatgatatttcaaTAAATACCATTGCAGTA
>TCONS_00055515
ATGAGTGGTCAACCACGGAGGATCCGTCTGAAGCCATGGCTGCTGGCACAGATCAACAGCGGGAAATACCCAGGACTGCATTGGCTCAATCAAGAGCGTAGACTCTTTCGGATCCCTTGGAGACATGCCACCCGTCATATGCCTACCCTGGAGGAGGAGAACACTATTTTTAAGGCTTGGGCTCTGGAAACCGGCAAGTACCAGGAAGGAATAGATGAGCCTGATCCAGCCAAATGGAAAGCTAACCTCCGCTGTGCCCTAAACAAAAGTCGGGAGTTCAGACTCAACTACGATGGCACTAAGGACACCCCCGTGCAGCCTTATAAGATCTATGAGGTGTGCGATCAGTCAGTCAATGGAGACCCCAGAGTGGGCGAACCTTCCAACTACCCAGCGTACCCTCCTAGAGTTGACGTTCCCTTTACTTCTCCGATTGGTGACAGTTATAATCCTGCCCACCACAACCCTCCAATGAACCTCATAGGAGACATTCACAATAACCCTAATGGAGGTGCTTCTATGGTCGCTCATCTGGCCCAGCCTAGCACTGGACCTTCTGAATTTCCCAGTCAGAGAGCTATCAAAGTTGAACAAGGAGCATTTCCTATTCATGGCGGCGGACTGCAGAATGGTATGGGAATGGGGACTGGAGTCATACCACCTCCTGTTCTTCAAGATGTAGTTACTCATCCTGTTGGACCTCCAGCCATAGTGGACAGCCCAATGCAGGAGGTGCCATCTCAAGCAGAGAACCAGATTCATCCCTGCATCTCAGAATTGCTGAGCAGCCCACACATGCTGCCCTTAACTGATCTGGATATCAAGTTCCAGTATAGGGGTCGGACGGCTGGTTCTCTGACGGTCAGTAACCCTCAGGGTTGTAGACTTTACTACGGTAACCTGGCGCCCACACTGGAGCAGGTGGCGCTGTTTGGTCCAGTCACTCTGCAGCAGGTGCTGTTTCCAGGAACGGCTGAGATCCAGAACGAGAAGCAGAGGTTCTACACCGACCATCTGCTGGACGTAATGGACCGAGGGCTGATTTTGGAGATCACGGGACAGGATATCTACGCCATCCGACTGTGCCAGTGTAAAGTGTTCTGGTCTGGGCCCGGTGTACTCGAGCAGGGTCCACCCAATCCAATGGAAAGAGAGATAAGGATCAGGGTCTTCAGTCTGAACAAGTTCCTTCAGGCTCTCATTTTGTATCAGAAAGGAGAGGCGCCCACTCCACCACCCTTTGAGATCTACTTCTGCTTTGGGGAAGACTGGCCTGACCGAAAGCCTAAGGAGAAAAAGCTCATCATTGTCCAGGTGGTTCCAGTTGTTGCCAGAATCCTTACCGAGATGTTTTCAGGTGAGCTCTCGTGGTCTACAGACAGCATTCGGTTGCAGATCTCCAACCCCGATTTAAAGGACCATACAGTGGAGCAGTTCAAAGAGATTCACAGACTTTTGCAGAGTCAAAGCGCACATCCCAACTGGCCGACTAACTGA
>TCONS_00055514
ATGAGTGGTCAACCACGGAGGATCCGTCTGAAGCCATGGCTGCTGGCACAGATCAACAGCGGGAAATACCCAGGACTGCATTGGCTCAATCAAGAGCGTAGACTCTTTCGGATCCCTTGGAGACATGCCACCCGTCATATGCCTACCCTGGAGGAGGAGAACACTATTTTTAAGGCTTGGGCTCTGGAAACCGGCAAGTACCAGGAAGGAATAGATGAGCCTGATCCAGCCAAATGGAAAGCTAACCTCCGCTGTGCCCTAAACAAAAGTCGGGAGTTCAGACTCAACTACGATGGCACTAAGGACACCCCCGTGCAGCCTTATAAGATCTATGAGGTGTGCGATCAGTCAGTCAATGGAGATGCCGTAGAGGATGAGGAAGAAGAGCTACAAAACTTTGTCCACCTTTCCATTGACCCCAGAGTGGGCGAACCTTCCAACTACCCAGCGTACCCTCCTAGAGTTGACGTTCCCTTTACTTCTCCGATTGGTGACAGTTATAATCCTGCCCACCACAACCCTCCAATGAACCTCATAGGAGACATTCACAATAACCCTAATGGAGGTGCTTCTATGGTCGCTCATCTGGCCCAGCCTAGCACTGGACCTTCTGAATTTCCCAGTCAGAGAGCTATCAAAGTTGAACAAGGAGCATTTCCTATTCATGGCGGCGGACTGCAGAATGGTATGGGAATGGGGACTGGAGTCATACCACCTCCTGTTCTTCAAGATGTAGTTACTCATCCTGTTGGACCTCCAGCCATAGTGGACAGCCCAATGCAGGAGGTGCCATCTCAAGCAGAGAACCAGATTCATCCCTGCATCTCAGAATTGCTGAGCAGCCCACACATGCTGCCCTTAACTGATCTGGATATCAAGTTCCAGTATAGGGGTCGGACGGCTGGTTCTCTGACGGTCAGTAACCCTCAGGGTTGTAGACTTTACTACGGTAACCTGGCGCCCACACTGGAGCAGGTGGCGCTGTTTGGTCCAGTCACTCTGCAGCAGGTGCTGTTTCCAGGAACGGCTGAGATCCAGAACGAGAAGCAGAGGTTCTACACCGACCATCTGCTGGACGTAATGGACCGAGGGCTGATTTTGGAGATCACGGGACAGGATATCTACGCCATCCGACTGTGCCAGTGTAAAGTGTTCTGGTCTGGGCCCGGTGTACTCGAGCAGGGTCCACCCAATCCAATGGAAAGAGAGATAAGGATCAGGGTCTTCAGTCTGAACAAGTTCCTTCAGGCTCTCATTTTGTATCAGAAAGGAGAGGCGCCCACTCCACCACCCTTTGAGATCTACTTCTGCTTTGGGGAAGACTGGCCTGACCGAAAGCCTAAGGAGAAAAAGCTCATCATTGTCCAGGTGGTTCCAGTTGTTGCCAGAATCCTTACCGAGATGTTTTCAGGTGAGCTCTCGTGGTCTACAGACAGCATTCGGTTGCAGATCTCCAACCCCGATTTAAAGGACCATACAGTGGAGCAGTTCAAAGAGATTCACAGACTTTTGCAGAGTCAAAGCGCACATCCCAACTGGCCGACTAACTGA
>TCONS_00055516
CCTGCTGGAGAGGCGCGATCAGTCAGTGCGAGCTTGATCTGCACTAAGGACGTTCAGACGCGGATCGAACCTTCACCTGGATATATGCGTCCGTCAGTTGACCTAAAGAACAGTGTTCACCATCACTACCTCCTCCGACCTCTTTGCTGTCCAGCACCATGAGTGGTCAACCACGGAGGATCCGTCTGAAGCCATGGCTGCTGGCACAGATCAACAGCGGGAAATACCCAGGACTGCATTGGCTCAATCAAGAGCGTAGACTCTTTCGGATCCCTTGGAGACATGCCACCCGTCATATGCCTACCCTGGAGGAGGAGAACACTATTTTTAAGGCTTGGGCTCTGGAAACCGGCAAGTACCAGGAAGGAATAGATGAGCCTGATCCAGCCAAATGGAAAGCTAACCTCCGCTGTGCCCTAAACAAAAGTCGGGAGTTCAGACTCAACTACGATGGCACTAAGGACACCCCCGTGCAGCCTTATAAGATCTATGAGGTGTGCGATCAGTCAGTCAATGGAGATGCCGTAGAGGATGAGGAAGAAGAGGTA

Function

symbol description
irf5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in immune system process and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cytokine-mediated signaling pathway; defense response to virus; and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including gill; heart; immune system; liver; and muscle. Human ortholog(s) of this gene implicated in herpes simplex; inflammatory bowel disease 14; multiple sclerosis; rheumatoid arthritis; and systemic lupus erythematosus. Orthologous to human IRF5 (interferon regulatory factor 5).

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0002376 immune system process biological_process
GO:0051607 defense response to virus biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04620 Toll-like receptor signaling pathway
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040426-2587 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in immune system process and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cytokine-mediated signaling pathway; defense response to virus; and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including gill; heart; immune system; liver; and muscle. Human ortholog(s) of this gene implicated in herpes simplex; inflammatory bowel disease 14; multiple sclerosis; rheumatoid arthritis; and systemic lupus erythematosus. Orthologous to human IRF5 (interferon regulatory factor 5).

Ensembl:

ensembl_id ENSDARG00000045681

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055512 False 2110 mRNA 0.49 10 13605600 13614936
TCONS_00055513 False 2536 lncRNA 0.47 9 13605607 13614821
TCONS_00055515 False 1497 mRNA 0.52 7 13605823 13613148
TCONS_00055514 False 1551 mRNA 0.51 9 13605823 13613148
TCONS_00055516 True 548 mRNA 0.52 5 13609420 13614797

Neighbor

gene id symbol gene type direction distance location
XLOC_028622 opn1sw1 coding downstream 25252 13577665 ~ 13580348 (-)
XLOC_028621 mdm1 coding downstream 38084 13551400 ~ 13567516 (-)
XLOC_028620 il22 coding downstream 56794 13544595 ~ 13548806 (-)
XLOC_028619 il26 coding downstream 66886 13535054 ~ 13538714 (-)
XLOC_028618 ifng1r coding downstream 87219 13517446 ~ 13518381 (-)
XLOC_028624 NA coding upstream 11046 13625982 ~ 13626833 (-)
XLOC_028625 BX897729.1 coding upstream 84049 13698985 ~ 13723156 (-)
XLOC_028626 NA coding upstream 265600 13880536 ~ 13889482 (-)
XLOC_028627 gxylt1b coding upstream 277837 13892773 ~ 13902188 (-)
XLOC_028628 yaf2 coding upstream 290586 13905522 ~ 13921206 (-)
XLOC_028615 NA non-coding downstream 115519 13489763 ~ 13490081 (-)
XLOC_028614 NA non-coding downstream 126779 13477229 ~ 13478821 (-)
XLOC_028613 NA non-coding downstream 212430 13345672 ~ 13393170 (-)
XLOC_028611 NA non-coding downstream 581432 13023507 ~ 13024168 (-)
XLOC_028609 NA non-coding downstream 615902 12988978 ~ 12989698 (-)
XLOC_028631 NA non-coding upstream 354225 13969161 ~ 13979713 (-)
XLOC_028632 NA non-coding upstream 491739 14106675 ~ 14162327 (-)
XLOC_028633 CR786571.2 non-coding upstream 552106 14167042 ~ 14170406 (-)

Expression


Co-expression Network