G948626 (LOC106579456)


Basic Information

Item Value
gene id G948626
gene name LOC106579456
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16298938 ~ 16299177 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1081710
CCTGTAGGAGTCACAGGCCTTGACAGGGGCGGGTTTAGGAGGGGCCTTGGGGGTTTCAGGTTTTTGCCGGCTAGTGGCCGAGGCCACGCAGTTTGGGTCTTCTGAGTCGGCGCAGGCCTTGTAGATGTCCCCTAGGTGGCCCAGGTAGGCCTTATAAGAGCGACGTCCCTCAGCACGGTTCTTATTTTGGAGGTAGGCCAGGTAGACCCTGTCCAGCTCCTGGACctaaggggggagggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1081710 True 240 lncRNA 0.61 1 16298938 16299177

Neighbor

gene id symbol gene type direction distance location
adipoqa LOC106579495 coding upstream 8194 16288944 ~ 16290744 (+)
tnk2a LOC106579455 coding upstream 23944 16254009 ~ 16274994 (+)
tfr1b LOC106579454 coding upstream 45616 16241581 ~ 16253322 (+)
ccl20b LOC100135878 coding upstream 87746 16209929 ~ 16211192 (+)
map3k15 map3k15 coding upstream 93884 16098605 ~ 16205054 (+)
LOC110535372 mynn coding downstream 28216 16327393 ~ 16338373 (+)
lrrc34 lrrc34 coding downstream 44151 16343328 ~ 16355927 (+)
klhl15 klhl15 coding downstream 84544 16383721 ~ 16397791 (+)
LOC110535377 LOC106579463 coding downstream 109468 16408645 ~ 16433176 (+)
LOC110535379 LOC106579465 coding downstream 135284 16434461 ~ 16441313 (+)
G948577 LOC106579456 non-coding upstream 336 16298356 ~ 16298602 (+)
G948583 NA non-coding upstream 20455 16266146 ~ 16278483 (+)
G948554 NA non-coding upstream 124366 16174292 ~ 16174572 (+)
G948545 NA non-coding upstream 125223 16136747 ~ 16173715 (+)
G948630 NA non-coding downstream 699 16299876 ~ 16300305 (+)
G948629 NA non-coding downstream 2669 16301846 ~ 16302047 (+)
G948627 NA non-coding downstream 3755 16302932 ~ 16308626 (+)
G948638 NA non-coding downstream 22943 16322120 ~ 16322965 (+)
G948576 NA non-coding downstream 92189 16391366 ~ 16392176 (+)
sh3kbp1 LOC106579452 other upstream 215656 16073315 ~ 16098499 (+)
G948524 NA other upstream 244300 16054065 ~ 16054638 (+)
boc LOC106579445 other upstream 505904 15747150 ~ 15800515 (+)
atp8a2 LOC106579514 other upstream 639476 15594416 ~ 15660363 (+)
G948587 NA other downstream 24173 16323350 ~ 16326407 (+)
LOC110535387 LOC106579475 other downstream 244638 16543682 ~ 16565783 (+)
G948710 NA other downstream 255023 16554200 ~ 16601892 (+)
G951511 NA other downstream 2827488 19126665 ~ 19127085 (+)

Expression


Co-expression Network