G948677


Basic Information

Item Value
gene id G948677
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16488662 ~ 16489052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1081762
tgaaacatgttcaatttggtttaaataatgcaaaaacaaagtgttggagaagaaagtaaaagtgcaacatgtgccatgtaaaaaaaaagctaagttccttgctcagaacatgagaacatatgaaagctggtggtttctttttacatgagtcttcaatattcccaggtaagtagttttaggttgtagttattataggactatttctctctataccatttgtatttcatatacctttgactattggatgttcttataggccctttagtattgccagtgtaacagtatagcttacGTCCCTCtcctcgacaacagccacccttggggaacaactacttcaagttCTCAGAGCGAGttacgtcaccgattgaaacgctattagtgcacaCCCCGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1081762 True 391 lncRNA 0.38 1 16488662 16489052

Neighbor

gene id symbol gene type direction distance location
LOC110516493 LOC106579471 coding upstream 10108 16444804 ~ 16478554 (+)
LOC110535379 LOC106579465 coding upstream 47349 16434461 ~ 16441313 (+)
LOC110535377 LOC106579463 coding upstream 55486 16408645 ~ 16433176 (+)
klhl15 klhl15 coding upstream 90871 16383721 ~ 16397791 (+)
lrrc34 lrrc34 coding upstream 132735 16343328 ~ 16355927 (+)
LOC110535384 EIF1AX coding downstream 8227 16497279 ~ 16513908 (+)
LOC110535386 NA coding downstream 35989 16525041 ~ 16529852 (+)
LOC110535385 LOC106579474 coding downstream 41584 16530636 ~ 16541258 (+)
LOC110535387 LOC106579475 coding downstream 54630 16543682 ~ 16565783 (+)
si:ch73-264p11.1 LOC106579497 coding downstream 106419 16595471 ~ 16606582 (+)
G948675 NA non-coding upstream 3383 16484991 ~ 16485279 (+)
G948569 NA non-coding upstream 8261 16478794 ~ 16480401 (+)
G948674 NA non-coding upstream 16100 16471714 ~ 16472562 (+)
G948565 LOC106579466 non-coding upstream 80265 16405167 ~ 16408397 (+)
G948576 NA non-coding upstream 96486 16391366 ~ 16392176 (+)
G948678 NA non-coding downstream 683 16489735 ~ 16489999 (+)
G948679 NA non-coding downstream 1218 16490270 ~ 16490683 (+)
G948682 NA non-coding downstream 5603 16494655 ~ 16494882 (+)
G948683 NA non-coding downstream 6537 16495589 ~ 16495819 (+)
G948685 LOC106579472 non-coding downstream 7158 16496210 ~ 16496784 (+)
LOC110535372 mynn other upstream 153370 16327393 ~ 16338373 (+)
G948587 NA other upstream 162255 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 277822 16209929 ~ 16211192 (+)
sh3kbp1 LOC106579452 other upstream 405380 16073315 ~ 16098499 (+)
G948524 NA other upstream 434024 16054065 ~ 16054638 (+)
G948710 NA other downstream 65148 16554200 ~ 16601892 (+)
G951511 NA other downstream 2637613 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 3272213 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 6237501 22712577 ~ 22741263 (+)

Expression


Co-expression Network