G948678


Basic Information

Item Value
gene id G948678
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16489735 ~ 16489999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1081763
caacgagccaggcggcccaaactgctgcatagaGCCTGACTGCATAGAgcctgttgcacagaacgcaagagaagtgacacaatttccctagttaaaaaaaattcatgttagcatgcaatattaactaaatatgcaggtttaaaaatatatacttgtgtattgattttaagaaaggcgttgatgtttatggttaggtgcacattggtgcaacgacagtgcttttttcgcgaatgcgcttgttaaataaccgtttggtgaagtaggc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1081763 True 265 lncRNA 0.40 1 16489735 16489999

Neighbor

gene id symbol gene type direction distance location
LOC110516493 LOC106579471 coding upstream 11181 16444804 ~ 16478554 (+)
LOC110535379 LOC106579465 coding upstream 48422 16434461 ~ 16441313 (+)
LOC110535377 LOC106579463 coding upstream 56559 16408645 ~ 16433176 (+)
klhl15 klhl15 coding upstream 91944 16383721 ~ 16397791 (+)
lrrc34 lrrc34 coding upstream 133808 16343328 ~ 16355927 (+)
LOC110535384 EIF1AX coding downstream 7280 16497279 ~ 16513908 (+)
LOC110535386 NA coding downstream 35042 16525041 ~ 16529852 (+)
LOC110535385 LOC106579474 coding downstream 40637 16530636 ~ 16541258 (+)
LOC110535387 LOC106579475 coding downstream 53683 16543682 ~ 16565783 (+)
si:ch73-264p11.1 LOC106579497 coding downstream 105472 16595471 ~ 16606582 (+)
G948677 NA non-coding upstream 683 16488662 ~ 16489052 (+)
G948675 NA non-coding upstream 4456 16484991 ~ 16485279 (+)
G948569 NA non-coding upstream 9334 16478794 ~ 16480401 (+)
G948674 NA non-coding upstream 17173 16471714 ~ 16472562 (+)
G948565 LOC106579466 non-coding upstream 81338 16405167 ~ 16408397 (+)
G948679 NA non-coding downstream 271 16490270 ~ 16490683 (+)
G948682 NA non-coding downstream 4656 16494655 ~ 16494882 (+)
G948683 NA non-coding downstream 5590 16495589 ~ 16495819 (+)
G948685 LOC106579472 non-coding downstream 6211 16496210 ~ 16496784 (+)
G948706 NA non-coding downstream 35873 16525872 ~ 16526071 (+)
LOC110535372 mynn other upstream 154443 16327393 ~ 16338373 (+)
G948587 NA other upstream 163328 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 278895 16209929 ~ 16211192 (+)
sh3kbp1 LOC106579452 other upstream 406453 16073315 ~ 16098499 (+)
G948524 NA other upstream 435097 16054065 ~ 16054638 (+)
G948710 NA other downstream 64201 16554200 ~ 16601892 (+)
G951511 NA other downstream 2636666 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 3271266 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 6236554 22712577 ~ 22741263 (+)

Expression


Co-expression Network