G948682


Basic Information

Item Value
gene id G948682
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16494655 ~ 16494882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1081770
ggacgtactgccaaattctctaaaacaatgttggaggtggcttatggtagagaaatgaacattacattctctggcaacagctctggtggacattcctgcactcAGTATACCAATTGCACacccctcaaaacttgagacatctgtggcattgtgttgtgtgacaaaactgcaaatttgagtggccttttaatgtccccagcacaaggtgcacctgcgtaaatatcatgc

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1081770 True 228 lncRNA 0.44 1 16494655 16494882

Neighbor

gene id symbol gene type direction distance location
LOC110516493 LOC106579471 coding upstream 16101 16444804 ~ 16478554 (+)
LOC110535379 LOC106579465 coding upstream 53342 16434461 ~ 16441313 (+)
LOC110535377 LOC106579463 coding upstream 61479 16408645 ~ 16433176 (+)
klhl15 klhl15 coding upstream 96864 16383721 ~ 16397791 (+)
lrrc34 lrrc34 coding upstream 138728 16343328 ~ 16355927 (+)
LOC110535384 EIF1AX coding downstream 2397 16497279 ~ 16513908 (+)
LOC110535386 NA coding downstream 30159 16525041 ~ 16529852 (+)
LOC110535385 LOC106579474 coding downstream 35754 16530636 ~ 16541258 (+)
LOC110535387 LOC106579475 coding downstream 48800 16543682 ~ 16565783 (+)
si:ch73-264p11.1 LOC106579497 coding downstream 100589 16595471 ~ 16606582 (+)
G948679 NA non-coding upstream 3972 16490270 ~ 16490683 (+)
G948678 NA non-coding upstream 4656 16489735 ~ 16489999 (+)
G948677 NA non-coding upstream 5603 16488662 ~ 16489052 (+)
G948675 NA non-coding upstream 9376 16484991 ~ 16485279 (+)
G948569 NA non-coding upstream 14254 16478794 ~ 16480401 (+)
G948683 NA non-coding downstream 707 16495589 ~ 16495819 (+)
G948685 LOC106579472 non-coding downstream 1328 16496210 ~ 16496784 (+)
G948706 NA non-coding downstream 30990 16525872 ~ 16526071 (+)
G948707 NA non-coding downstream 32875 16527757 ~ 16527973 (+)
LOC110535372 mynn other upstream 159363 16327393 ~ 16338373 (+)
G948587 NA other upstream 168248 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 283815 16209929 ~ 16211192 (+)
sh3kbp1 LOC106579452 other upstream 411373 16073315 ~ 16098499 (+)
G948524 NA other upstream 440017 16054065 ~ 16054638 (+)
G948710 NA other downstream 59318 16554200 ~ 16601892 (+)
G951511 NA other downstream 2631783 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 3266383 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 6231671 22712577 ~ 22741263 (+)

Expression


Co-expression Network