XLOC_028628 (yaf2)


Basic Information

Item Value
gene id XLOC_028628
gene name yaf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13905522 ~ 13921206 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055520
GGAGCCGCGCGAGAGGAGGACAGAGCGCGAGAGGCGGCGGTGCCTGCAACGCTTCCCACAAAACTTTCTGCAGCATGGGAGACAAGAGGAGTCCGACGagGCCAAAAAGGCAAGCGAAGCCCTCCTCTGACGACGGCTATTGGGACTGCAGCGTGTGTACATTCAAGAACACCGCCGAAGCGTTCAAATGCATGATGTGCGATGTCAGGAAGGGCACGTcaacccgGAAACCTCGTCCTGTTTCCCAGCTGGTATCCCAGCAAGTCACACAGCAGTTTGCTTCAGCCACACTGCCCAAGAAAGAGAAGAAGGAGAAGACGGAGAAGGATAAGAATGAGAGAGAACCCACACTGAAAAAGAACAACCACAAGAAAATGAGGCCCAGGTTAAAAAATGTGGACCGAAGCAGCGCACAGCATTTGGAGGTGACGGTGGGAGATCTGACAGTTATCATAACAGACTATAAGGAGAAAACCAAGCCCTCGTCCAGTTCGTCCTCCAGCGCGACATCTGCAGATCACCACAGCCAGAGCGGGTCCAACTCAGACAACACAGAGAAGGGCATTTCCAGATCCTCGTCCCCTCGAGGAGAAGTTTCCTCACTCAACGGGGAATCTCACTAGAAAACCGTGGATTACTTCcgaaaatatattcattttaaaaatcaacagGACCACGCTTATGTATGCCAAGACTTACAGACTTAACCCAGCAATATAAGCCATCTCTCACTACTACCAACGTTATAGGATCTGGAGACATAGGATTTGACTTGTCCTCATTTGTTACTACACCTAGTAGGTCAGCTTGAGATGAGCTGTAGACTTTGTAAGCAATTTCGATAAGTGAATTCGATGACATTTTTGGCAATTTTATTAACATCGTAGTATTATGAGTCGAATAAGTGTTGTCTGTTTGGATTCAGACATCATCGACAGCcattcttgtttgtttttactgtcaTGACTAAACTATTTCTTCAAACAACAATCTGTAATTGCTGCAACAGCACCTGAGGCTTACAAAACGTGTTGATTCAACTGGAACGCAAATGTATTTGCTTTTACATGAATGAAATGTCAGTTGCGGTTAATATACTTTAAAAGCATTACAGGGTGGGCATCAAAAGGGTTGTTTTACCCCAAAATGAACAATTTATACTTTAAAATACACAAGACTTTTGTTGATCTTTGAAAcagaaatgaagatatttttaataattctgtaACATTTCTTTTTATTCAAAGTCTATTCATCTAAAACTCTGATGCTACTATCATGAAGAGATCAAATTTATGATGAACACATTTAATTTAGGCTTTTATTCACTATAAACTTTGAACAGAGGGACCGAAgtctttcatatttattaaaaatatcttcattttttgTTCCAAAGATGAGCAAATGTGTTAGGAATATTTGTTTAGGGCCATCTATGAGTAACTGTGACCGAAAcaggatttcttttttcttttttcttttttgttgttgttgcaccTGCTGGTACTTTGTACGGTTTTAAAAGAAAATCTTgaaattgtttgttcatttgttctctTTCATGCCTTTTTTTTGACACTTGTCATGGTAGATTGCATCACTTGTTCAGCTAGTTGTTCTTCCAGCTGTTTTATGTTAGATTGTCTCTATAATTCTGTTAAATTCCACAAGAAACAAGGTTTATGACTAAAAAAGATGAAAGAAATGTATTTGTAATGATGATGATTCATCCCTTCCTTTATGATGGTAATGgtggtatataaatatattgcagTATAGGAAATATCTCTTAATAAAATTTAAGATTTAGACTCCC
>TCONS_00055521
AGAGCGCGAGAGGCGGCGGTGCCTGCAACGCTTCCCACAAAACTTTCTGCAGCATGGGAGACAAGAGGAGTCCGACGaggtaaaaacaaacagaaagaaaCTCCCACAGCCGTGGCTTCAAGAAGAGGTCGATTCAGGGCTCTCAAACAGACCATTAGGCAGCGCGCGTGAATGAGAAAGACGCAACAAGAGTGGCCACCATGGCGGACTGGCTGTTTTATCAACCTAAAGTGCCAAAAAGGCAAGCGAAGCCCTCCTCTGACGACGGCTATTGGGACTGCAGCGTGTGTACATTCAAGAACACCGCCGAAGCGTTCAAATGCATGATGTGCGATGTCAGGAAGGGCACGTcaacccgGAAACCTCGTCCTGTTTCCCAGCTGGTATCCCAGCAAGTCACACAGCAGTTTGCTTCAGCCACACTGCCCAAGAAAGAGAAGAAGGAGAAGACGGAGAAGGATAAGAATGAGAGAGAACCCACACTGAAAAAGAACAACCACAAGAAAATGAGGCCCAGGTTAAAAAATGTGGACCGAAGCAGCGCACAGCATTTGGAGGTGACGGTGGGAGATCTGACAGTTATCATAACAGACTATAAGGAGAAAACCAAGCCCTCGTCCAGTTCGTCCTCCAGCGCGACATCTGCAGATCACCACAGCCAGAGCGGGTCCAACTCAGACAACACAGAGAAGGGCATTTCCAGATCCTCGTCCCCTCGAGGAGAAGTTTCCTCACTCAACGGGGAATCTCACTAGAAAACCGTGGATTACTTCcgaaaatatattcattttaaaaatcaacagGACCACGCTTATGTATGCCAAGACTTACAGACTTAACCCAGCAATATAAGCCATCTCTCACTACTACCAACGTTATAGGATCTGGAGACATAGGATTTGACTTGTCCTCATTTGTTACTACACCTAGTA
>TCONS_00055522
GCGGTGCCTGCAACGCTTCCCACAAAACTTTCTGCAGCATGGGAGACAAGAGGAGTCCGACGaggtaaaaacaaacagaaagaaaCTCCCACAGCCGTGGCTTCAAGAAGAGGTCGATTCAGGGCTCTCAAACAGACCATTAGGCAGCGCGCGTGAATGAGAAAGACGCAACAAGAGTGGCCACCATGGCGGACTGGCTGTTTTATCAACCTAAAGTGtcagttcattaaaaaaaatcgcGTCGCTCGCGCGGCCGTCCGACTGACTTTGTGAATGGATAAGATCTGATATATGTGTCGGAGACTTCCACAGTCCGTGGTGTGATTTTCTctctgtttgttttgctttttgaagGCCAAAAAGGCAAGCGAAGCCCTCCTCTGACGACGGCTATTGGGACTGCAGCGTGTGTACATTCAAGAACACCGCCGAAGCGTTCAAATGCATGATGTGCGATGTCAGGAAGGGCACGTcaacccgGAAACCTCGTCCTGTTTCCCAGCTGGTATCCCAGCAAGTCACACAGCAGTTTGCTTCAGCCACACTGCCCAAGAAAGAGAAGAAGGAGAAGACGGAGAAGGATAAGAATGAGAGAGAACCCACACTGAAAAAGAACAACCACAAGAAAATGAGG

Function

symbol description
yaf2 Predicted to enable DNA binding activity and transcription coregulator activity. Acts upstream of or within forebrain development and negative regulation of apoptotic process. Predicted to be active in nucleus. Is expressed in forebrain; head; and midbrain. Orthologous to human YAF2 (YY1 associated factor 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0030900 forebrain development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041210-115 Predicted to enable DNA binding activity and transcription coregulator activity. Acts upstream of or within forebrain development and negative regulation of apoptotic process. Predicted to be active in nucleus. Is expressed in forebrain; head; and midbrain. Orthologous to human YAF2 (YY1 associated factor 2).

Ensembl:

ensembl_id ENSDARG00000015966

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055520 False 1819 mRNA 0.40 4 13905522 13921206
TCONS_00055521 False 932 mRNA 0.49 4 13906541 13921185
TCONS_00055522 True 634 lncRNA 0.50 2 13909308 13921170

Neighbor

gene id symbol gene type direction distance location
XLOC_028627 gxylt1b coding downstream 3334 13892773 ~ 13902188 (-)
XLOC_028626 NA coding downstream 16040 13880536 ~ 13889482 (-)
XLOC_028625 BX897729.1 coding downstream 182366 13698985 ~ 13723156 (-)
XLOC_028624 NA coding downstream 278689 13625982 ~ 13626833 (-)
XLOC_028623 irf5 coding downstream 290586 13605600 ~ 13614936 (-)
XLOC_028629 zcrb1 coding upstream 2721 13923927 ~ 13931508 (-)
XLOC_028630 prickle1b coding upstream 42293 13963499 ~ 13995766 (-)
XLOC_028631 NA coding upstream 47955 13969161 ~ 13979713 (-)
XLOC_028632 NA coding upstream 185469 14106675 ~ 14162327 (-)
XLOC_028633 CR786571.2 coding upstream 245836 14167042 ~ 14170406 (-)
XLOC_028615 NA non-coding downstream 415441 13489763 ~ 13490081 (-)
XLOC_028614 NA non-coding downstream 426701 13477229 ~ 13478821 (-)
XLOC_028613 NA non-coding downstream 512352 13345672 ~ 13393170 (-)
XLOC_028635 NA non-coding upstream 253033 14174239 ~ 14186729 (-)
XLOC_028636 CR786571.1 non-coding upstream 255315 14176521 ~ 14179480 (-)

Expression


Co-expression Network