G949770 (LOC106578374)


Basic Information

Item Value
gene id G949770
gene name LOC106578374
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16929310 ~ 16929846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1083018
TGAGACATTGTATTCCAGCCAAAAACAAACAGACATTGTCATGCAGACCTTAGGAGGTAGGTCTAGGTCTGTTCGTAGCCAGGAGCTGCGGTCCAGTTTGTCGAGCGGGGGAGCGAGGCGGGGAAGAGGTATAGAAGGAGGGGTGTCTGAGGTAGGGTCAGAGTTCTGGCGGGGCATGGGGGGGCGGCCGGAGGATGGGGAGGGGGACAGGGCTGTGACCCCTGCAGGGTCGTGGAGAGACTGGGACCCAGACAGACCATGGGACTTCACTTGCACCAGGTGGGCCATCTGACAAGACCAGACCATAACAGACCAGAGGAGCAGGATCATACATCAGCACCAGGCAGGTAGAGGAGCAGGATCATACATCAGCACCAGGCAGGTAGAGGAGCAGGATCATACATCAGCACCAGGCAGGTAGAGGAGCAGgtgtagaggaggaagagaggaggagccagaggagaggagaggggaaagaggtgaggaaagtagaggggggggg

Function

NR:

description
TRAF2 and NCK-interacting protein kinase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1083018 True 502 lncRNA 0.58 2 16929310 16929846

Neighbor

gene id symbol gene type direction distance location
LOC110535396 nceh1 coding downstream 73781 16849751 ~ 16855529 (-)
LOC100136317 LOC100136317 coding downstream 86492 16834398 ~ 16842818 (-)
LOC110536607 NA coding downstream 125445 16801581 ~ 16803865 (-)
LOC110535393 LOC106579498 coding downstream 139107 16787452 ~ 16790203 (-)
LOC118937469 NA coding downstream 357751 16567348 ~ 16571559 (-)
LOC110535400 LOC106578397 coding upstream 85446 17015292 ~ 17017135 (-)
LOC110535401 LOC106578376 coding upstream 87810 17017656 ~ 17021148 (-)
LOC110535402 LOC106578378 coding upstream 104315 17034161 ~ 17035895 (-)
c8g LOC100136109 coding upstream 106805 17036651 ~ 17042895 (-)
msrb2 LOC106578379 coding upstream 114891 17044737 ~ 17047374 (-)
G949694 NA non-coding downstream 32776 16895536 ~ 16896534 (-)
G949693 NA non-coding downstream 129977 16799133 ~ 16799333 (-)
G949690 NA non-coding downstream 135190 16793836 ~ 16794120 (-)
G949671 LOC106579490 non-coding downstream 168461 16757817 ~ 16760849 (-)
G949635 NA non-coding downstream 210234 16717822 ~ 16719076 (-)
G949736 NA non-coding upstream 37311 16967157 ~ 16976538 (-)
G949803 NA non-coding upstream 93890 17023736 ~ 17025028 (-)
G949820 NA non-coding upstream 120378 17050224 ~ 17093027 (-)
G949852 NA non-coding upstream 170853 17100699 ~ 17101145 (-)
G949853 NA non-coding upstream 173935 17103781 ~ 17108903 (-)
G949560 NA other downstream 292321 16563634 ~ 16636989 (-)
otos LOC106579496 other downstream 614463 16312928 ~ 16314905 (-)
cops9 NA other downstream 620710 16302932 ~ 16308724 (-)
G949426 NA other downstream 635259 16293514 ~ 16294051 (-)
tnfrsf11a tnfrsf11a other upstream 937003 17858123 ~ 17879460 (-)
LOC110535423 LOC106578417 other upstream 1120824 18050118 ~ 18138989 (-)
G950851 NA other upstream 1225838 18155684 ~ 18157247 (-)
zfhx4 LOC106578414 other upstream 1313364 18234892 ~ 18365014 (-)
G951231 NA other upstream 1647469 18577315 ~ 18583155 (-)

Expression

G949770(LOC106578374) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
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G949770(LOC106578374) Expression in each Bioproject

Bar chart with 10 bars.
G949770(LOC106578374) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.

Co-expression Network