XLOC_002863


Basic Information

Item Value
gene id XLOC_002863
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32216413 ~ 32250846 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006079
TTTGGCCCACGCCGACACATCTGCAGCTCTGAATGATGGAGGACAGGAAAAACGGGGAGAACGTGTAGGAATGACGGATGGAGgACAGTCTATTGGGGGCAGCAGTGGGATCCGCTTTCATCCCTCCGGGTAAAGAATCATGAGCCATTCTTTACTGGATTCAAACCccattgttgtggtcaactcctctctgtgtctcaagtccgctgacgtacatggcgagctaactggacaaactggtaacagtgggaaagccgtctatacggaggtaagcggtcagctggtaagcgtgataAGGAATAGCGTCATATCGCCCTGTATTGTTAGATAAAATGCAGTCATGCAACCTATGGCCACAttattcgcgatctccagaaatctatatagggctacattttcagaataagcttaccttatttattcagcttttatataatgtattaatctcactttccaaaaaaaaaaaatacccttGTGACTGGTTTTGTGGCCCAGGGTCACATATATAATATGCATAACAGAATGAATGCAATACATGTATCACAACCAGGCCAGGTTCTCCCCACTTCCAATCACCGCTCTCAGTCATCCCAATCAGCATGATCTCCTTGACTTGAGTACTAATCACTCCCATGCATGTCATCCCCAGTTATCACTCCATACCCTAAAAACCCTGCACTCCGTTTACCCAGTGTCCGGCCTTGCTGCGTCAAGAAGGACGAACTCTCACGGTCAGTGATACCATTAGCAATTAGTTATACTTACCTGTCTGATACTGTTAATCTCCAGTGTCTGCGTCTCTGCTCCTTCCAAATGTCATTCCTACTGGTAGTGTGTTTCCCAATCTCCTCTGTGTCTATATCCATCATCTTTCTCAGGTTCAATTCCATCCTGGTTCATTGCTCATCCTATCAAGATAAAAACTTTACCTG
>TCONS_00006080
GTTTGGTGATAGAGTCAACAGTGGAAATGAGGATCTCTTTTGGAAAAACACGCAGCGTGTCGGgtttctctgtaaaactggACAGTCTATTGGGGGCAGCAGTGGGATCCGCTTTCATCCCTCCGGGTAAAGAATCATGGTAAATCTCTAAAGAGACTGTCAGGTTACACATTCACCCGAACAGTAGCGCAACATCTGTCTGTGGAGTGTGAGTCCAGCAATTATTTACAGCATCCCAGGTGGTCTGTGAGTGACCTGAGCTCCATCACGAACTGAAGAGTGACTGCAGGGTCACCGCAAACTGCTTCCACCTTTGCACTTTAGATTGAGCATTGGTCGCCACATCTAACTGGATTCAGAAGGCTGTCAGTCTTTTCCTGCTGTGCAAAAGTAGCCCGAGCTTCTGCGTTCAGTCTGCCATGGCCAGCGGGCACCTTGATGTCCAAACCACATCAAATTGGCATTGACGTTGAcgtaaaaaacatgtcaaaaatgctaATCGATTTGACATCcgtttgacatccacacattgatgcccctttgaccaccaaaataacaacataaaatatataaagaattaATATTACCATGACAAATTTACACTGGATGTTTGTGtccctacaatgcatgtaaactaccttgatgtcaacatgaaaactgtaaaaaaattttagattttttaatgtttttcccCCATGTGTTAATGTCAATTTGAtcaattttttatgtgttttggtgtgtttttagATGTGGTTTTGACCTCAAGCTGCCCACTGTGTACATCTGTACAGGGTGGTTTACAAAAGCTGATTCCTTTACTATTAAATAGGACACTTGAAATGCTATTTACTtccatctatttattattatgactTCAGTACTACTGCAAGTTCTACGCCCAGTACTGCCGCTCCC
>TCONS_00005771
CACAGGCGCCGTCGCTTTCCAAAAGACCTCCTTAAAACTGACTGGAAAGCTCATGAAGGGCTGCTTGCTCATCTGTTTGGCCCACGCCGACACATCTGCAGCTCTGAATGATGGAGGACAGGAAAAACGGGGAGAACGTGTAGGAATGACGGATGGAGgACAGTCTATTGGGGGCAGCAGTGGGATCCGCTTTCATCCCTCCGGGTAAAGAATCATGGTAAATCTCTAAAGAGACTGTCAGGTTACACATTCACCCGAACAGTAGCGCAACATCTGTCTGTGGAGTGTGAGTCCAGCAATTATTTACAGCATCCCAGGTGGTCTGTGAGTGACCTGAGCTCCATCACGAACTGAAGAGTGACTGCAGGGTCACCGCAAACTGCTTCCACCTTTGCACTTTAGATTGAGCATTGGTCGCCACATCTAACTGGATTCAGAAGGCTGTCAGTCTTTTCCTGCTGTGCAAAAGTAGCCCGAGCTTCTGCGTTCAGTCTGCCATGGCCAGCGGGCACCTTGATGTCCAAACCACATCAAATTGGCATTGACGTTGAcgtaaaaaacatgtcaaaaatgctaATCGATTTGACATCcgtttgacatccacacattgatgcccctttgaccaccaaaataacaacataaaatatataaagaattaATATTACCATGACAAATTTACACTGGATGTTTGTGtccctacaatgcatgtaaactaccttgatgtcaacatgaaaactgtaaaaaaattttagattttttaatgtttttcccCCATGTGTTAATGTCAATTTGAtcaattttttatgtgttttggtgtgtttttagATGTGGTTTTGACCTCAAGCTGCCCACTGTGTACATCTGTACAGGGTGGTTTACAAAAGCTGATTCCTTTACTATTAAATAGGACACTTGAAATGCTATTTACTtccatctatttattattatgactTCAGTACTACTGCAAGTTCTACGCCCAGTACTGCCGCTCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006079 False 932 lncRNA 0.45 3 32216413 32250771
TCONS_00006080 False 915 lncRNA 0.42 2 32229939 32239728
TCONS_00005771 True 993 lncRNA 0.43 2 32229939 32250846

Neighbor

gene id symbol gene type direction distance location
XLOC_002862 NA coding downstream 131789 32077811 ~ 32084624 (-)
XLOC_002861 vps26bl coding downstream 410490 31800212 ~ 31805923 (-)
XLOC_002860 fez1 coding downstream 433797 31738501 ~ 31782616 (-)
XLOC_002859 robo3 coding downstream 653364 31298972 ~ 31563049 (-)
XLOC_002858 NA coding downstream 921407 31262852 ~ 31295006 (-)
XLOC_002864 uvrag coding upstream 14011 32264857 ~ 32494499 (-)
XLOC_002865 dgat2 coding upstream 251115 32501961 ~ 32524771 (-)
XLOC_002866 mogat2 coding upstream 283968 32534814 ~ 32610776 (-)
XLOC_002867 NA coding upstream 333839 32584685 ~ 32591462 (-)
XLOC_002868 umodl1 coding upstream 362860 32613706 ~ 32639941 (-)
XLOC_002854 CT737197.1 non-coding downstream 1685156 30531143 ~ 30531257 (-)
XLOC_002845 CU861448.1 non-coding downstream 2508231 29708068 ~ 29708182 (-)
XLOC_002843 NA non-coding downstream 2725326 29266270 ~ 29491087 (-)
XLOC_002870 NA non-coding upstream 425964 32676810 ~ 32678245 (-)
XLOC_002871 NA non-coding upstream 529034 32779880 ~ 32780290 (-)
XLOC_002875 NA non-coding upstream 644151 32894997 ~ 32896944 (-)
XLOC_002877 NA non-coding upstream 907743 33158589 ~ 33164573 (-)

Expression


Co-expression Network