XLOC_028630 (prickle1b)


Basic Information

Item Value
gene id XLOC_028630
gene name prickle1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13963499 ~ 13995766 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055525
CTGGGATTCAAACTGGCTTTCTGCGTCTCCGCTATGCTGACCCATTGCTTCGCGATATTTGGATACTGAGCCCCTCCGCGTCCTTTACAAAGACCGCTGGTTTACTTTCTGACAGCTGTACGGGAGCAAATGACACCAGTTGTGAATATTTTCTAACAGCAACGGGAATAAAATACCTCACTTCGTCACCTGCCCCCATCCCATGAGTCTTGAGACTACATCTGGGATCTGGCCCATTACTCGGGCACCGGACATGGACTCGAGAGGAGCCAAGGCATTTGGGTTTCAGAGGAGTTCAACGTCTGATGACGACTCTGGATGTGCTCTTGAGGAGTACACATGGGTTCCTCCTGGACTACGGGCTGAGCAGGTTCAGATCTACTTTTCGTGCCTACCAGAAGAGAAGGTGCCATATGTCAACAGCCCTGGAGAGAAGCACAGGATCAGACAACTACTCTATCAGCTGCCACCCCACGACAATGAGATTCGATACTGCCAGTCCCTCAGTGATGAAGAGAGACGAGAACTCCACATGTTCAGCatgcaaagaaagaaagaggcaCTTGGGAGGGGGACCCCAAAACTGCTTCCCAGAGCTCTGCAACATAATTGTGAGCATTGTAAAGAGAACATCAACGGTGGAGAGATGGCAGTGTTTGCTTCGAGAGCAGGCCCCGGCCcttgctggcacccagcatgcttTACTTGCTACACCTGTCATGAACTTCTGGTGGACCTCATCTATTTCTACCACAATGGCAATATCCACTGCGGCAGACATCATGCAGAGCTTCTGAAGCCACGTTGCTCAGCATGTGATGAGATTATCTTTGCTGACGAGTGTACCGAAGCTGAGGGTCGTCACTGGCACATGAAACATTTTTCATGCTTTGAGTGCGAGACTATTTTAGGAGGACAGAGGTACATCATGAAAGATGGCCGACCCTTCTGTTGTGGATGCTTTGAGTCATTGTATGCAGAGTACTGCGAGGCCTGTGGAGAGAATATTGGAGTCGACCATGCTCAAATGACGTACGAGGGTGTACATTGGCACGCTACTGACAAATGCTTTTGTTGTGCACAATGTAAAACCTCTCTGCTGGGCTGTCCCTTCCTTCCAAAAGATGGTCGTATCTACTGCTCTAAGGACTGTAGCCTAGGTGAGGATGTCCAGGCTTCTGATTCTTCAGACTCCGCTTTTCAGTCCGCCAGATCACGGGAATCTCGACGCAGTATTCGAATGGGCAAGAGTAGTCGCCCCACAGAACAGTGCCAGCAGACAAAATTGTACTCAGCAACAGATTACAGGACCTCTAGTCTATGTGGCGACAACACAGAGACAATGTGTCATCAGCTGGAGAGAATCAACTTTACAGAAGACAACTACTGGAGAGAGCGAGATGAGCAGGAAGCCCCTGAGGACTCTGTGGAAGATTGGGCTGAGCATGAGGACTACATGACTCAGCTGCTCCTGAAATTTGGAGACCGTGGTGTCATCCACGCAGAGGACAGCAGGGCAGCAGAGCCATGGATGGTGAAAGACACCGAAACCAACCGAACCAAACCAGAGATAAAGATGAGCGGCCACAATTTGGCAAGTAAAAAGCACCACACTGACATGTATTGGGCCCAGTCTCAGGATGGACTTGGAGACTCTGCTTATGGTAGTCACCCTGGACCAGCTAGCGCTAGAAAGATTCAAGAGCTGGAGATGGATCAGGGAACAGTACCTGGATTTTGGTCTGAGCCAAGGCAATGGTATGAAGACTCATTAGAGTGCATTACAAGTGAACTCCGGAAGGCAGACCACAATATTGGAGATTCTATGGATTCTCTGGCTCTCTCAAATATTACAGGAGCTTCAGTGGATGGGGACAGCAAGGACAGACAGACCATTTACTCCCTCCAAAACATGAAAGACCAAGAAAGAGAGATAGAAGAGTGTGATAACATTAGTAACGTAGGCACACTAAACTCCTCAATGCTCCACAGAAGTGCTAATTCCCTGAGGAGTTTAAACTCCGAGCTAGGTCATGAGGAGACACTGGGGCAGGGAGCAAGAGAAGACGATGAAGAGGACAGAATACCACCATATTTTGGAGCAGAACCACCATCTCCTCTGAATCTTCCAGTGCTGAGAAGGACCAAGTCACAATCTCAGCCGCAATCCAGATCTCAGCAAGTAAAGTTCTCTGATGATGTTCTGGAGAAAGGGTATTATGGTGCACTGGGCTTAAGGCAACCACCAATGAGTGAGAGGACACGCAGGAGGACCTTTCACATAGAGGAGGAGGCAGCGGCAGCAGCAGAGAGACGTCCTGCTAACAGACATCACCACAAACGCAGGCACAGTCGGAAAACGCGTTCAGAAAATGCATTGCACCTGCCTTCCAAAAATCGTGGGAAACTGCATGTTGTGCCTCAGGTAATCAGCTCAAACATGCCAGAGCCCAGGAATGGTATTCTACTAAATCACTCGGCGCACAGTCAGCACCCTTATCGTCAAACCACCTCAGACTTTCCTCAGCAAGGTATGGTCCGACTGGACCAATTCCAGGACTTTTGTGATGATGACGAAGAAGATGATTGGTGTTCAACATGCTCTTCTTCATCTTCAGAATCTGAGGAGGAGGGATTCTTTCTAGGTCAGCCAATCCCTAAGCCCCGATCCCAAAGTTTTCATTATTACACAGAGGACTATCCGACTCGGGTCACGGCTTTAACGCCTCCTTTTGGCTCAAGGACCAAACTGAAAAAGAAAGGTCACAAGGGCAAGAACTGCATAATTTCTTAGACTGAAGATTGCCTCTGTTTCAGCTGGAATATACTCATGCCTGATCCTACAGAAGATGGAAAGTTCTCTTTACAAACACTGAGAGCCAATTACGTTGCTGTTGTACAAACAAAGAAAGTAACATGTAAGATTTCCTTGTACATTGTATAGCAAAAGCATTATTCCCAAAAGCGAAATAAAAGTAGCATGTAGActaactaaataattatttaatagtgCAAGCGATGTATATTTGTTAAATTAAGATTGGAATACTGATATTTTTATATCCAATTATGTTAAATGAGTAATTACCACAATTTACTGACCTGATGgagtttttatgattattaaatgaACTAATTGAGGTTTGCTGACCAGGGATTTGCAAATGCAAAATATATATGCACTATTCATGCGTGATGCCCTCGTTATGTTATTCTACAAGGTGTAATAAGTGCACCCTTTAAGATTTCTCTGTCCATAATGTGTTTATGCGCTTAAACAATGTTAGGGGAATCTTTCCTCTAGTATATACACAATACACCACAGGTAACCATGCTATCCTTTTTATCGTTGAGATGTCAATAAAATATTTCAAGAGAGATTTAAAACA
>TCONS_00055526
CGCGTTCAGAAGCACAGCATCATCCAAGCTACACTGGAATTTACCTGAGATCATTGTGGACATGCTGGATAGATTCTCTTTCCTCTGTTGTTTGCACTAATTTGAGGCTGTTTGTAAATGGTGCAGGATGCATTACGCAAAGTGCCCCCATCCCATGAGTCTTGAGACTACATCTGGGATCTGGCCCATTACTCGGGCACCGGACATGGACTCGAGAGGAGCCAAGGCATTTGGGTTTCAGAGGAGTTCAACGTCTGATGACGACTCTGGATGTGCTCTTGAGGAGTACACATGGGTTCCTCCTGGACTACGGGCTGAGCAGGTTCAGATCTACTTTTCGTGCCTACCAGAAGAGAAGGTGCCATATGTCAACAGCCCTGGAGAGAAGCACAGGATCAGACAACTACTCTATCAGCTGCCACCCCACGACAATGAGATTCGATACTGCCAGTCCCTCAGTGATGAAGAGAGACGAGAACTCCACATGTTCAGCatgcaaagaaagaaagaggcaCTTGGGAGGGGGACCCCAAAACTGCTTCCCAGAGCTCTGCAACATAATTGTGAGCATTGTAAAGAGAACATCAACGGTGGAGAGATGGCAGTGTTTGCTTCGAGAGCAGGCCCCGGCCcttgctggcacccagcatgcttTACTTGCTACACCTGTCATGAACTTCTGGTGGACCTCATCTATTTCTACCACAATGGCAATATCCACTGCGGCAGACATCATGCAGAGCTTCTGAAGCCACGTTGCTCAGCATGTGATGAGATTATCTTTGCTGACGAGTGTACCGAAGCTGAGGGTCGTCACTGGCACATGAAACATTTTTCATGCTTTGAGTGCGAGACTATTTTAGGAGGACAGAGGTACATCATGAAAGATGGCCGACCCTTCTGTTGTGGATGCTTTGAGTCATTGTATGCAGAGTACTGCGAGGCCTGTGGAGAGAATATTGGAGTCGACCATGCTCAAATGACGTACGAGGGTGTACATTGGCACGCTACTGACAAATGCTTTTGTTGTGCACAATGTAAAACCTCTCTGCTGGGCTGTCCCTTCCTTCCAAAAGATGGTCGTATCTACTGCTCTAAGGACTGTAGCCTAGGTGAGGATGTCCAGGCTTCTGATTCTTCAGACTCCGCTTTTCAGTCCGCCAGATCACGGGAATCTCGACGCAGTATTCGAATGGGCAAGAGTAGTCGCCCCACAGAACAGTGCCAGCAGACAAAATTGTACTCAGCAACAGATTACAGGACCTCTAGTCTATGTGGCGACAACACAGAGACAATGTGTCATCAGCTGGAGAGAATCAACTTTACAGAAGACAACTACTGGAGAGAGCGAGATGAGCAGGAAGCCCCTGAGGACTCTGTGGAAGATTGGGCTGAGCATGAGGACTACATGACTCAGCTGCTCCTGAAATTTGGAGACCGTGGTGTCATCCACGCAGAGGACAGCAGGGCAGCAGAGCCATGGATGGTGAAAGACACCGAAACCAACCGAACCAAACCAGAGATAAAGATGAGCGGCCACAATTTGGCAAGTAAAAAGCACCACACTGACATGTATTGGGCCCAGTCTCAGGATGGACTTGGAGACTCTGCTTATGGTAGTCACCCTGGACCAGCTAGCGCTAGAAAGATTCAAGAGCTGGAGATGGATCAGGGAACAGTACCTGGATTTTGGTCTGAGCCAAGGCAATGGTATGAAGACTCATTAGAGTGCATTACAAGTGAACTCCGGAAGGCAGACCACAATATTGGAGATTCTATGGATTCTCTGGCTCTCTCAAATATTACAGGAGCTTCAGTGGATGGGGACAGCAAGGACAGACAGACCATTTACTCCCTCCAAAACATGAAAGACCAAGAAAGAGAGATAGAAGAGTGTGATAACATTAGTAACGTAGGCACACTAAACTCCTCAATGCTCCACAGAAGTGCTAATTCCCTGAGGAGTTTAAACTCCGAGCTAGGTCATGAGGAGACACTGGGGCAGGGAGCAAGAGAAGACGATGAAGAGGACAGAATACCACCATATTTTGGAGCAGAACCACCATCTCCTCTGAATCTTCCAGTGCTGAGAAGGACCAAGTCACAATCTCAGCCGCAATCCAGATCTCAGCAAGTAAAGTTCTCTGATGATGTTCTGGAGAAAGGGTATTATGGTGCACTGGGCTTAAGGCAACCACCAATGAGTGAGAGGACACGCAGGAGGACCTTTCACATAGAGGAGGAGGCAGCGGCAGCAGCAGAGAGACGTCCTGCTAACAGACATCACCACAAACGCAGGCACAGTCGGAAAACGCGTTCAGAAAATGCATTGCACCTGCCTTCCAAAAATCGTGGGAAACTGCATGTTGTGCCTCAGGTAATCAGCTCAAACATGCCAGAGCCCAGGAATGGTATTCTACTAAATCACTCGGCGCACAGTCAGCACCCTTATCGTCAAACCACCTCAGACTTTCCTCAGCAAGGTATGGTCCGACTGGACCAATTCCAGGACTTTTGTGATGATGACGAAGAAGATGATTGGTGTTCAACATGCTCTTCTTCATCTTCAGAATCTGAGGAGGAGGGATTCTTTCTAGGTCAGCCAATCCCTAAGCCCCGATCCCAAAGTTTTCATTATTACACAGAGGACTATCCGACTCGGGTCACGGCTTTAACGCCTCCTTTTGGCTCAAGGACCAAACTGAAAAAGAAAGGTCACAAGGGCAAGAACTGCATAATTTCTTAGACTGAAGATTGCCTCTGTTTCAGCTGGAATATACTCATGCCTGATCCTACAGAAGATGGAAAGTTCTCTTTACAAACACTGAGAGCCAATTACGTTGCTGTTGTACAAACAAAGAAAGTAACATGTAAGATTTCCTTGTACATTGTATAGCAAAAGCATTATTCCCAAAAGCGAAATAAAAGTAGCATGTAGActaactaaataattatttaatagtgCAAGCGATGTATATTTGTTAAATTAAGATTGGAATACTGATATTTTTATATCCAATTATGTTAAATGAGTAATTACCACAATTTACTGACCTGATGgagtttttatgattattaaatgaACTAATTGAGGTTTGCTGACCAGGGATTTGCAAATGCAAAATATATATGCACTATTCATGCGTGATGCCCTCGTTATGTTATTCTACAAGGTGTAATAAGTGCACCCTTTAAGATTTCTCTGTCCATAATGTGTTTATGCGCTTAAACAATGTTAGGGGAATCTTTCCTCTAGTATATACACAATACACCACAGGTAACCATGCTATCCTTTTTATCGTTGAGATGTCAATAAAATATTTCAAGAGAGATTT
>TCONS_00055527
CGCGTTCAGAAGCACAGCATCATCCAAGCTACACTGGAATTTACCTGAGATCATTGTGGACATGCTGGATAGATTCTCTTTCCTCTGTTGTTTGCACTAATTTGAGGCTGTTTGTAAATGGTGCAGGATGCATTACGCAAAGTGCCCCCATCCCATGAGTCTTGAGACTACATCTGGGATCTGGCCCATTACTCGGGCACCGGACATGGACTCGAGAGGAGCCAAGGCATTTGGGTTTCAGAGGAGTTCAACGTCTGATGACGACTCTGGATGTGCTCTTGAGGAGTACACATGGGTTCCTCCTGGACTACGGGCTGAGCAGGTTCAGATCTACTTTTCGTGCCTACCAGAAGAGAAGGTGCCATATGTCAACAGCCCTGGAGAGAAGCACAGGATCAGACAACTACTCTATCAGCTGCCACCCCACGACAATGAGATTCGATACTGCCAGTCCCTCAGTGATGAAGAGAGACGAGAACTCCACATGTTCAGCatgcaaagaaagaaagaggcaCTTGGGAGGGGGACCCCAAAACTGCTTCCCAGAGCTCTGCAACATAATTGTGAGCATTGTAAAGAGAACATCAACGGTGGAGAGATGGCAGTGTTTGCTTCGAGAGCAGGCCCCGGCCcttgctggcacccagcatgcttTACTTGCTACACCTGTCATGAACTTCTGGTGGACCTCATCTATTTCTACCACAATGGCAATATCCACTGCGGCAGACATCATGCAGAGCTTCTGAAGCCACGTTGCTCAGCATGTGATGAGATTATCTTTGCTGACGAGTGTACCGAAGCTGAGGGTCGTCACTGGCACATGAAACATTTTTCATGCTTTGAGTGCGAGACTATTTTAGGAGGACAGAGGTACATCATGAAAGATGGCCGACCCTTCTGTTGTGGATGCTTTGAGTCA

Function

symbol description
prickle1b Predicted to enable zinc ion binding activity. Acts upstream of or within nervous system development and neural crest cell migration. Is expressed in several structures, including mesoderm; myotome; nervous system; neuroepithelial cell; and pharyngeal arch. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 1B. Orthologous to human PRICKLE1 (prickle planar cell polarity protein 1).

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0001764 neuron migration biological_process
GO:0021934 hindbrain tangential cell migration biological_process
GO:0097475 motor neuron migration biological_process
GO:0021754 facial nucleus development biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2152 Predicted to enable zinc ion binding activity. Acts upstream of or within nervous system development and neural crest cell migration. Is expressed in several structures, including mesoderm; myotome; nervous system; neuroepithelial cell; and pharyngeal arch. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 1B. Orthologous to human PRICKLE1 (prickle planar cell polarity protein 1).

Ensembl:

ensembl_id ENSDARG00000045694

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055525 False 3389 mRNA 0.46 8 13963499 13995766
TCONS_00055526 False 3335 mRNA 0.46 8 13963505 13973213
TCONS_00055527 True 922 mRNA 0.50 6 13966451 13973213
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Neighbor

gene id symbol gene type direction distance location
XLOC_028629 zcrb1 coding downstream 31991 13923927 ~ 13931508 (-)
XLOC_028628 yaf2 coding downstream 42293 13905522 ~ 13921206 (-)
XLOC_028627 gxylt1b coding downstream 61311 13892773 ~ 13902188 (-)
XLOC_028626 NA coding downstream 74017 13880536 ~ 13889482 (-)
XLOC_028625 BX897729.1 coding downstream 240343 13698985 ~ 13723156 (-)
XLOC_028632 NA coding upstream 110909 14106675 ~ 14162327 (-)
XLOC_028633 CR786571.2 coding upstream 171276 14167042 ~ 14170406 (-)
XLOC_028634 si:dkey-234l24.7 coding upstream 174693 14170459 ~ 14173138 (-)
XLOC_028635 NA coding upstream 178473 14174239 ~ 14186729 (-)
XLOC_028636 CR786571.1 coding upstream 180755 14176521 ~ 14179480 (-)
XLOC_028624 NA non-coding downstream 336666 13625982 ~ 13626833 (-)
XLOC_028615 NA non-coding downstream 473418 13489763 ~ 13490081 (-)
XLOC_028614 NA non-coding downstream 484678 13477229 ~ 13478821 (-)
XLOC_028613 NA non-coding downstream 570329 13345672 ~ 13393170 (-)
XLOC_028641 NA non-coding upstream 351101 14346867 ~ 14360848 (-)

Expression

Expression of XLOC_028630(prickle1b) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Expression of XLOC_028630(prickle1b) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network