G949120


Basic Information

Item Value
gene id G949120
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17403352 ~ 17403588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1082250
CAGAACGGTTGCCACGACCTTCCAGGGTCGGTCTGGGATACAGTGCGATAACATTGGCTCTTTGGTGTTTGAGGGGCGTCGTTCAAGACAGGTGGTGCATTTAGCAACAATATCCTCTATTTGTTTGCACATTCCATGCCAAAACAAAATGTCCTGTGCTCCCTGATTTCACTTTTCCATGCCCATGTGTCCAGCATGGATCTTTGTCAAAATCTCTTCTCTGAGACTGGTAGGAAT

Function

NR:

description
PREDICTED: hephaestin-like protein 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1082250 True 237 lncRNA 0.47 1 17403352 17403588

Neighbor

gene id symbol gene type direction distance location
LOC118937326 NA coding upstream 12293 17386005 ~ 17391059 (+)
ezh2 ezh2 coding upstream 34143 17356706 ~ 17369209 (+)
LOC110535409 LOC106578385 coding upstream 50911 17342791 ~ 17352441 (+)
LOC110536567 pkd1l1 coding upstream 60721 17289622 ~ 17342631 (+)
spag6 spag6 coding upstream 117783 17281407 ~ 17285569 (+)
LOC110535414 NA coding downstream 40680 17444268 ~ 17537220 (+)
tpk1 NA coding downstream 306099 17709687 ~ 17789321 (+)
pign pign coding downstream 523046 17926634 ~ 17945204 (+)
LOC110535422 LOC106578412 coding downstream 545841 17949429 ~ 17960000 (+)
hnf4g hnf4g coding downstream 556598 17960186 ~ 17981897 (+)
G949111 NA non-coding upstream 15985 17387135 ~ 17387367 (+)
G949105 NA non-coding upstream 43974 17359137 ~ 17359378 (+)
G949103 NA non-coding upstream 46948 17356018 ~ 17356404 (+)
G949087 NA non-coding upstream 90079 17313051 ~ 17313273 (+)
G949136 LOC106578389 non-coding downstream 24902 17428490 ~ 17459732 (+)
G949183 NA non-coding downstream 110233 17513821 ~ 17520003 (+)
G949186 NA non-coding downstream 113327 17516915 ~ 17518259 (+)
G949255 NA non-coding downstream 231390 17634978 ~ 17636793 (+)
G950188 NA non-coding downstream 266144 17669732 ~ 17669943 (+)
G948710 NA other upstream 801460 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 858063 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 1068060 16327393 ~ 16338373 (+)
G948587 NA other upstream 1076945 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 1192512 16209929 ~ 16211192 (+)
G951511 NA other downstream 1723077 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 2357677 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 5322965 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 6261700 23665288 ~ 23665930 (+)
G956797 NA other downstream 6372184 23775772 ~ 23776845 (+)

Expression


Co-expression Network