Gene
RNA
| Item | Value |
|---|---|
| gene id | G949136 |
| gene name | LOC106578389 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 17428490 ~ 17459732 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| contactin-associated protein-like 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1082268 | True | 835 | lncRNA | 0.50 | 2 | 17428490 | 17459732 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118937326 | NA | coding | upstream | 37431 | 17386005 ~ 17391059 (+) |
| ezh2 | ezh2 | coding | upstream | 59281 | 17356706 ~ 17369209 (+) |
| LOC110535409 | LOC106578385 | coding | upstream | 76049 | 17342791 ~ 17352441 (+) |
| LOC110536567 | pkd1l1 | coding | upstream | 85859 | 17289622 ~ 17342631 (+) |
| spag6 | spag6 | coding | upstream | 142921 | 17281407 ~ 17285569 (+) |
| tpk1 | NA | coding | downstream | 249955 | 17709687 ~ 17789321 (+) |
| pign | pign | coding | downstream | 466902 | 17926634 ~ 17945204 (+) |
| LOC110535422 | LOC106578412 | coding | downstream | 489697 | 17949429 ~ 17960000 (+) |
| hnf4g | hnf4g | coding | downstream | 500454 | 17960186 ~ 17981897 (+) |
| pex2 | pex2 | coding | downstream | 732892 | 18192624 ~ 18204153 (+) |
| G949120 | NA | non-coding | upstream | 24902 | 17403352 ~ 17403588 (+) |
| G949111 | NA | non-coding | upstream | 41123 | 17387135 ~ 17387367 (+) |
| G949105 | NA | non-coding | upstream | 69112 | 17359137 ~ 17359378 (+) |
| G949103 | NA | non-coding | upstream | 72086 | 17356018 ~ 17356404 (+) |
| G949183 | NA | non-coding | downstream | 54089 | 17513821 ~ 17520003 (+) |
| G949186 | NA | non-coding | downstream | 57183 | 17516915 ~ 17518259 (+) |
| G949255 | NA | non-coding | downstream | 175246 | 17634978 ~ 17636793 (+) |
| G950188 | NA | non-coding | downstream | 210000 | 17669732 ~ 17669943 (+) |
| G950225 | NA | non-coding | downstream | 230080 | 17689812 ~ 17690023 (+) |
| G948710 | NA | other | upstream | 826598 | 16554200 ~ 16601892 (+) |
| LOC110535387 | LOC106579475 | other | upstream | 883201 | 16543682 ~ 16565783 (+) |
| LOC110535372 | mynn | other | upstream | 1093198 | 16327393 ~ 16338373 (+) |
| G948587 | NA | other | upstream | 1102083 | 16323350 ~ 16326407 (+) |
| ccl20b | LOC100135878 | other | upstream | 1217650 | 16209929 ~ 16211192 (+) |
| G951511 | NA | other | downstream | 1666933 | 19126665 ~ 19127085 (+) |
| phldb2b | tcpe | other | downstream | 2301533 | 19740565 ~ 19799150 (+) |
| tlcd4a | LOC106570700 | other | downstream | 5266821 | 22712577 ~ 22741263 (+) |
| G956728 | LOC106613263 | other | downstream | 6205556 | 23665288 ~ 23665930 (+) |
| G956797 | NA | other | downstream | 6316040 | 23775772 ~ 23776845 (+) |
