G949255


Basic Information

Item Value
gene id G949255
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17634978 ~ 17636793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1082391
accaccactaccttcactgaactgttatcactaccatcatcattactactactaccaccatcacagaactgttatcactaccatcaccattactactactaccaccatcacagaactgttatcactaccatcaccattactactactactaccaccatcacagaactgttatcactaccatcaccattactactaacactaccatcactgaactgttatcactaccatcaccattactactactactaccaccatcactgaactgttatcactaccatcaccattactacccccaccaccatcactgaactgttatcactaccatcaccattactactactactaccaccatcacagaactgttatcactaccatcaccattactactactactaccaccaccactgaaatgttatcactaccatcaccattactactattactaccaccatCACAGAACTGTTATCACTAacatcaccattactactactactaccaccatcactgaactgtaatcactaccatcaccattactactGCCACCATAAcagaactgttatcactaccatcaccattactTCTACTGCCACCATCActgaactgttatcactaccatcaccattactactactactaccaccatcactgaactgttatcactaccatcatcattactacccccaccaccatcactgaactgctatcactaccatcatcattactaccaccactaccatcactgaactgttatcactaccatcatcattactactactaccaccatcactgaactgctatcactaccatcatcattactactactaccaccatcactgaactgctatcactaccatcaccattactactactaccaccatcactgaactgctatcactaccatcaccattactactactactaccatcactgaactgttatcactaccatcaccattactactaccaccaccatcactgaactgctatcactaccatcaccattgctactactaccaccatcactgaactgctatcactaccatcaccattactactactactaccatcactgaactgctatcactaccatcaccattactactactaccaccatcacagaacagttatcactaccatcaccattactactaccaccaccatcactgaactgctatcactaccatcatcattactactac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1082391 True 1198 lncRNA 0.41 2 17634978 17636793

Neighbor

gene id symbol gene type direction distance location
LOC110535414 NA coding upstream 97758 17444268 ~ 17537220 (+)
LOC118937326 NA coding upstream 243919 17386005 ~ 17391059 (+)
ezh2 ezh2 coding upstream 265769 17356706 ~ 17369209 (+)
LOC110535409 LOC106578385 coding upstream 282537 17342791 ~ 17352441 (+)
LOC110536567 pkd1l1 coding upstream 292347 17289622 ~ 17342631 (+)
tpk1 NA coding downstream 72894 17709687 ~ 17789321 (+)
pign pign coding downstream 289841 17926634 ~ 17945204 (+)
LOC110535422 LOC106578412 coding downstream 312636 17949429 ~ 17960000 (+)
hnf4g hnf4g coding downstream 323393 17960186 ~ 17981897 (+)
pex2 pex2 coding downstream 555831 18192624 ~ 18204153 (+)
G949183 NA non-coding upstream 114975 17513821 ~ 17520003 (+)
G949186 NA non-coding upstream 116719 17516915 ~ 17518259 (+)
G949136 LOC106578389 non-coding upstream 175246 17428490 ~ 17459732 (+)
G949120 NA non-coding upstream 231390 17403352 ~ 17403588 (+)
G949111 NA non-coding upstream 247611 17387135 ~ 17387367 (+)
G950188 NA non-coding downstream 32939 17669732 ~ 17669943 (+)
G950225 NA non-coding downstream 53019 17689812 ~ 17690023 (+)
G950246 NA non-coding downstream 71602 17708395 ~ 17708618 (+)
G950317 NA non-coding downstream 193220 17830013 ~ 17830880 (+)
G950302 NA non-coding downstream 198505 17835298 ~ 17839157 (+)
G948710 NA other upstream 1033086 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 1089689 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 1299686 16327393 ~ 16338373 (+)
G948587 NA other upstream 1308571 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 1424138 16209929 ~ 16211192 (+)
G951511 NA other downstream 1489872 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 2124472 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 5089760 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 6028495 23665288 ~ 23665930 (+)
G956797 NA other downstream 6138979 23775772 ~ 23776845 (+)

Expression


Co-expression Network