XLOC_028635


Basic Information

Item Value
gene id XLOC_028635
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14174239 ~ 14186729 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058140
CACGACTGGTAACACACGTTGGTTGAGGACAAAGTTACGGAGAGTTGTGGGTACGAAACCCAGCTCGGGTGTGTGGAGTACACCAAAGACAATACCTGGGGCGGTATAACAGAACAGAGGGCGGAGCAGAGGGTGGAAACCAAAAGCACAAAGTGAAACACGGACCAGATCATAAACATACCTGGGGCGGTAAGACAACTGAGCGGCAAAGGCATCCTGGGGCGGTAAGACTACACAGCGGTGATGGCTCGGACAAACCTGCAGCGGTGAGACAGAAAGGTAGGCTGGACTGAGAGGCGGGacaaggagagaggtggagcaAGGAGGGGCGGAGAGAGGTGGAGCAAGGAGGGgcggagcagagagaggggaagcaGGAGTTGAAAAGAAAGAagggaa
>TCONS_00055535
GGATGGCACGACTGGTAACACACGTTGGTTGAGGACAAAGTTACGGAGAGTTGTGGGTACGAAACCCAGCTCGGGTGTGTGGAGTACACCAAAGACAATACCTGGGGCGGTATAACAGAACAGAGGGCGGAGCAGAGGGTGGAAACCAAAAGCACAAAGTGAAACACGGACCAGATCATAAACATACCTGGGGCGGTAAGACAACTGAGCGGCAAAGGCATCCTGGGGCGGTAAGACTACACAGCGGTGATGGCTCGGACAAACCTGCAGCGGTGAGACAGAAAGGTAGGCTGGACTGAGAGGCTGGACTGAGAGGCGGGACAAGTAGAGAGGTGGAGCAAGGAGGGgcggagcagagagaggggaagcaGGAGTTGAAAAGAAAGAagggaa

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:0070697 activin receptor binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097023

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058140 False 399 lncRNA 0.55 2 14174239 14186723
TCONS_00055535 True 393 lncRNA 0.55 2 14174239 14186729

Neighbor

gene id symbol gene type direction distance location
XLOC_028634 si:dkey-234l24.7 coding downstream 1101 14170459 ~ 14173138 (-)
XLOC_028633 CR786571.2 coding downstream 3833 14167042 ~ 14170406 (-)
XLOC_028632 NA coding downstream 11912 14106675 ~ 14162327 (-)
XLOC_028630 prickle1b coding downstream 178473 13963499 ~ 13995766 (-)
XLOC_028631 NA coding downstream 194526 13969161 ~ 13979713 (-)
XLOC_028638 pus7l coding upstream 1598 14188327 ~ 14192254 (-)
XLOC_028639 twf1b coding upstream 6351 14193080 ~ 14207471 (-)
XLOC_028640 nell2b coding upstream 60964 14247693 ~ 14328997 (-)
XLOC_028641 NA coding upstream 160138 14346867 ~ 14360848 (-)
XLOC_028642 NA coding upstream 244234 14430963 ~ 14444890 (-)
XLOC_028626 NA non-coding downstream 284757 13880536 ~ 13889482 (-)
XLOC_028624 NA non-coding downstream 547406 13625982 ~ 13626833 (-)
XLOC_028647 BX571719.1 non-coding upstream 557847 14744576 ~ 14744691 (-)
XLOC_028648 NA non-coding upstream 577621 14764350 ~ 14893241 (-)
XLOC_028653 NA non-coding upstream 788603 14975332 ~ 14980376 (-)

Expression


Co-expression Network