G950347


Basic Information

Item Value
gene id G950347
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17901359 ~ 17901870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1083674
gttgtagagagggagagatggtgttgtagagagggagagggagagatggtgttgtagagagggagagggagagatggtgttgtagagagggagagggagagatggtgttgtagagagggagagaaagggggtagagagagagaggagatccaAGTAACTAAAAGTAAAAAGTTTATTACACGACTGTTGCCTATTCATTCttactaatgtgtgtgtgtgtgtgtgtgttaccccaGCTCTACAAAGGAGGCTTTGAGGCTGTCCAGGGGGGCATGTGAGAGAGACAGTGTCGTCATGACATCCTCTAGAAAACCAACAAGCAGCTTACGATCCTCA

Function

NR:

description
PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1083674 True 336 lncRNA 0.48 2 17901359 17901870

Neighbor

gene id symbol gene type direction distance location
tpk1 NA coding upstream 112038 17709687 ~ 17789321 (+)
LOC110535414 NA coding upstream 364139 17444268 ~ 17537220 (+)
LOC118937326 NA coding upstream 510300 17386005 ~ 17391059 (+)
ezh2 ezh2 coding upstream 532150 17356706 ~ 17369209 (+)
LOC110535409 LOC106578385 coding upstream 548918 17342791 ~ 17352441 (+)
pign pign coding downstream 24764 17926634 ~ 17945204 (+)
LOC110535422 LOC106578412 coding downstream 47559 17949429 ~ 17960000 (+)
hnf4g hnf4g coding downstream 58316 17960186 ~ 17981897 (+)
pex2 pex2 coding downstream 290754 18192624 ~ 18204153 (+)
LOC110535429 nup58 coding downstream 888300 18790170 ~ 18802871 (+)
G950303 NA non-coding upstream 49821 17840822 ~ 17851538 (+)
G950302 NA non-coding upstream 62202 17835298 ~ 17839157 (+)
G950317 NA non-coding upstream 70479 17830013 ~ 17830880 (+)
G950246 NA non-coding upstream 192741 17708395 ~ 17708618 (+)
G950225 NA non-coding upstream 211336 17689812 ~ 17690023 (+)
G950378 NA non-coding downstream 54817 17956687 ~ 17958862 (+)
G950673 NA non-coding downstream 252233 18154103 ~ 18155431 (+)
G950706 NA non-coding downstream 304485 18206355 ~ 18206604 (+)
G950708 NA non-coding downstream 308536 18210406 ~ 18210671 (+)
G948710 NA other upstream 1299467 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 1356070 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 1566067 16327393 ~ 16338373 (+)
G948587 NA other upstream 1574952 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 1690519 16209929 ~ 16211192 (+)
G951511 NA other downstream 1224795 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 1859395 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 4824683 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 5763418 23665288 ~ 23665930 (+)
G956797 NA other downstream 5873902 23775772 ~ 23776845 (+)

Expression


Co-expression Network