Gene
RNA
| Item | Value |
|---|---|
| gene id | G950378 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 17956687 ~ 17958862 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1083715 | False | 506 | lncRNA | 0.38 | 4 | 17956687 | 17957901 |
| TU1083716 | True | 549 | lncRNA | 0.39 | 5 | 17957241 | 17958862 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pign | pign | coding | upstream | 11483 | 17926634 ~ 17945204 (+) |
| tpk1 | NA | coding | upstream | 167366 | 17709687 ~ 17789321 (+) |
| LOC110535414 | NA | coding | upstream | 419467 | 17444268 ~ 17537220 (+) |
| LOC118937326 | NA | coding | upstream | 565628 | 17386005 ~ 17391059 (+) |
| ezh2 | ezh2 | coding | upstream | 587478 | 17356706 ~ 17369209 (+) |
| hnf4g | hnf4g | coding | downstream | 1324 | 17960186 ~ 17981897 (+) |
| pex2 | pex2 | coding | downstream | 233762 | 18192624 ~ 18204153 (+) |
| LOC110535429 | nup58 | coding | downstream | 831308 | 18790170 ~ 18802871 (+) |
| ankrd33ba | LOC106578420 | coding | downstream | 863472 | 18822334 ~ 18844891 (+) |
| LOC110535436 | LOC106578460 | coding | downstream | 1339717 | 19298579 ~ 19310732 (+) |
| G950347 | NA | non-coding | upstream | 54817 | 17901359 ~ 17901870 (+) |
| G950303 | NA | non-coding | upstream | 105149 | 17840822 ~ 17851538 (+) |
| G950302 | NA | non-coding | upstream | 117530 | 17835298 ~ 17839157 (+) |
| G950317 | NA | non-coding | upstream | 125807 | 17830013 ~ 17830880 (+) |
| G950246 | NA | non-coding | upstream | 248069 | 17708395 ~ 17708618 (+) |
| G950673 | NA | non-coding | downstream | 195241 | 18154103 ~ 18155431 (+) |
| G950706 | NA | non-coding | downstream | 247493 | 18206355 ~ 18206604 (+) |
| G950708 | NA | non-coding | downstream | 251544 | 18210406 ~ 18210671 (+) |
| G950669 | LOC106578414 | non-coding | downstream | 276030 | 18234892 ~ 18238442 (+) |
| G948710 | NA | other | upstream | 1354795 | 16554200 ~ 16601892 (+) |
| LOC110535387 | LOC106579475 | other | upstream | 1411398 | 16543682 ~ 16565783 (+) |
| LOC110535372 | mynn | other | upstream | 1621395 | 16327393 ~ 16338373 (+) |
| G948587 | NA | other | upstream | 1630280 | 16323350 ~ 16326407 (+) |
| ccl20b | LOC100135878 | other | upstream | 1745847 | 16209929 ~ 16211192 (+) |
| G951511 | NA | other | downstream | 1167803 | 19126665 ~ 19127085 (+) |
| phldb2b | tcpe | other | downstream | 1802403 | 19740565 ~ 19799150 (+) |
| tlcd4a | LOC106570700 | other | downstream | 4767691 | 22712577 ~ 22741263 (+) |
| G956728 | LOC106613263 | other | downstream | 5706426 | 23665288 ~ 23665930 (+) |
| G956797 | NA | other | downstream | 5816910 | 23775772 ~ 23776845 (+) |
