G950673


Basic Information

Item Value
gene id G950673
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 18154103 ~ 18155431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1084058
ctcttcttctctttccttctctcttcctctacttctctttccttctctcctcctctctcttcctctgcttctctttccttctctcttcctctacttctctttcattctctcattttctgcttctctttccttctcttctcctctctcttcccctgcttctctttctttctctcaacttctgcttctctttccttctctcctcctctctcttcctctgcttctccttccttctctcctcttcctctgcttctcattccttctctcttcctctgcttctctcatcttctctcttcctctgcttctctttcattctct
>TU1084057
ctctgcttctctccccttctctcatcctctgcttctccttccttctctcttcttcctctacttctctttccttctctcttcctctacttctctttccttctctcctcttctctcttcctctacttctctttccttctctcctcctctctcttcctctgcttctctttccttctctcttcctctacttctctttcattctctcattttctgcttctctttccttctcttctcctctctcttcccctgcttctctttccttctcttctcctctctcttctcctgcttctctttctttctctcaacttctgcttctctttccttctctcatcctctctcttcctctgcttctctttccttctctcgtcttctctcttcctctgcttctctttccttctctcatcccctctcttcctctgcttctctttccttctctcatcctctcttcctctgcttctctttccttctctcctctctcttcctctgcttctctccccttctctcttcctctgcttctccttccttctctcttcttcctctacttctctttccttctctcatcctctctcttcctctgcttctctttccttctttcctcctctctcttcctctgcttctctttccttctctcctcttctctcttactcttcttctctttccttctctcttcctctgcttctctttccttctctctcttcctctgcttctctttccttctctcgtcttctctcttcctctgcttctctttccttctctcatcctctctcttcctctgcttctctttccttctctcaccctctcttcctctgcttctctttccttctctcctctctcttcccctgcttctctttcattctctcctcccctctcttcctctgcttctctcctcttctcttctcctctgcttctttttccttctctcttcctctgcttctctttccttctctattcctctctcttctcctgcttctctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1084058 False 315 lncRNA 0.45 2 18154103 18154635
TU1084057 True 971 lncRNA 0.47 2 18154230 18155431

Neighbor

gene id symbol gene type direction distance location
hnf4g hnf4g coding upstream 172206 17960186 ~ 17981897 (+)
LOC110535422 LOC106578412 coding upstream 194103 17949429 ~ 17960000 (+)
pign pign coding upstream 208899 17926634 ~ 17945204 (+)
tpk1 NA coding upstream 364782 17709687 ~ 17789321 (+)
LOC110535414 NA coding upstream 616883 17444268 ~ 17537220 (+)
pex2 pex2 coding downstream 37193 18192624 ~ 18204153 (+)
LOC110535429 nup58 coding downstream 634739 18790170 ~ 18802871 (+)
ankrd33ba LOC106578420 coding downstream 666903 18822334 ~ 18844891 (+)
LOC110535436 LOC106578460 coding downstream 1143148 19298579 ~ 19310732 (+)
LOC110535438 NA coding downstream 1174550 19329981 ~ 19335648 (+)
G950378 NA non-coding upstream 195241 17956687 ~ 17958862 (+)
G950347 NA non-coding upstream 252233 17901359 ~ 17901870 (+)
G950303 NA non-coding upstream 302565 17840822 ~ 17851538 (+)
G950302 NA non-coding upstream 314946 17835298 ~ 17839157 (+)
G950317 NA non-coding upstream 323223 17830013 ~ 17830880 (+)
G950706 NA non-coding downstream 50924 18206355 ~ 18206604 (+)
G950708 NA non-coding downstream 54975 18210406 ~ 18210671 (+)
G950669 LOC106578414 non-coding downstream 79461 18234892 ~ 18238442 (+)
G950761 NA non-coding downstream 161168 18316599 ~ 18317453 (+)
G948710 NA other upstream 1552211 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 1608814 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 1818811 16327393 ~ 16338373 (+)
G948587 NA other upstream 1827696 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 1943263 16209929 ~ 16211192 (+)
G951511 NA other downstream 971234 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 1605834 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 4571122 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 5509857 23665288 ~ 23665930 (+)
G956797 NA other downstream 5620341 23775772 ~ 23776845 (+)

Expression


Co-expression Network