G950708


Basic Information

Item Value
gene id G950708
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 18210406 ~ 18210671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1084099
attattatttgaccatgctggtcatttatgaacacttgaacatcttggccatgttctgttatattctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttatggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatata

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1084099 True 266 lncRNA 0.46 1 18210406 18210671

Neighbor

gene id symbol gene type direction distance location
pex2 pex2 coding upstream 6253 18192624 ~ 18204153 (+)
hnf4g hnf4g coding upstream 228509 17960186 ~ 17981897 (+)
LOC110535422 LOC106578412 coding upstream 250406 17949429 ~ 17960000 (+)
pign pign coding upstream 265202 17926634 ~ 17945204 (+)
tpk1 NA coding upstream 421085 17709687 ~ 17789321 (+)
LOC110535429 nup58 coding downstream 579499 18790170 ~ 18802871 (+)
ankrd33ba LOC106578420 coding downstream 611663 18822334 ~ 18844891 (+)
LOC110535436 LOC106578460 coding downstream 1087908 19298579 ~ 19310732 (+)
LOC110535438 NA coding downstream 1119310 19329981 ~ 19335648 (+)
ssm4 ssm4 coding downstream 1131310 19341981 ~ 19345685 (+)
G950706 NA non-coding upstream 3802 18206355 ~ 18206604 (+)
G950673 NA non-coding upstream 54975 18154103 ~ 18155431 (+)
G950378 NA non-coding upstream 251544 17956687 ~ 17958862 (+)
G950347 NA non-coding upstream 308536 17901359 ~ 17901870 (+)
G950669 LOC106578414 non-coding downstream 24221 18234892 ~ 18238442 (+)
G950761 NA non-coding downstream 105928 18316599 ~ 18317453 (+)
G950787 NA non-coding downstream 149361 18360032 ~ 18369456 (+)
G951103 NA non-coding downstream 244930 18455601 ~ 18455904 (+)
G951129 NA non-coding downstream 265055 18475726 ~ 18476057 (+)
G948710 NA other upstream 1608514 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 1665117 16543682 ~ 16565783 (+)
LOC110535372 mynn other upstream 1875114 16327393 ~ 16338373 (+)
G948587 NA other upstream 1883999 16323350 ~ 16326407 (+)
ccl20b LOC100135878 other upstream 1999566 16209929 ~ 16211192 (+)
G951511 NA other downstream 915994 19126665 ~ 19127085 (+)
phldb2b tcpe other downstream 1550594 19740565 ~ 19799150 (+)
tlcd4a LOC106570700 other downstream 4515882 22712577 ~ 22741263 (+)
G956728 LOC106613263 other downstream 5454617 23665288 ~ 23665930 (+)
G956797 NA other downstream 5565101 23775772 ~ 23776845 (+)

Expression


Co-expression Network